Two dynamic regimes in the human gut microbiome

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Regularized estimation in sparse high-dimensional time series models

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Metagenomics meets time series analysis: unraveling microbial community dynamics

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Identifying personal microbiomes using metagenomic codes

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The Earth Microbiome project: successes and aspirations

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Rethinking “Enterotypes”

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(2014) Georg K. Gerber   FEBS LETTERS

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Identifying Keystone Species in the Human Gut Microbiome from Metagenomic Timeseries Using Sparse Linear Regression

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Longitudinal analysis of microbial interaction between humans and the indoor environment

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Host lifestyle affects human microbiota on daily timescales

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Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

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Dysbiosis in inflammatory bowel diseases: the oxygen hypothesis

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Diet rapidly and reproducibly alters the human gut microbiome

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Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota

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The Impact of the Gut Microbiota on Human Health: An Integrative View

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The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic–anoxic interphases

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Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

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Detecting Causality in Complex Ecosystems

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Inferring Correlation Networks from Genomic Survey Data

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Treating Clostridium difficile Infection With Fecal Microbiota Transplantation

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

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Enterotypes of the human gut microbiome

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Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Moving pictures of the human microbiome

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QIIME allows analysis of high-throughput community sequencing data

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Forensic identification using skin bacterial communities

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The role of pH in determining the species composition of the human colonic microbiota

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