CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets

A cytosolic network suppressing mitochondria-mediated proteostatic stress and cell death

(2015) Xiaowen Wang et al.   NATURE

Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol

(2015) Lidia Wrobel et al.   NATURE

Targeted exploration and analysis of large cross-platform human transcriptomic compendia

(2015) Qian Zhu et al.   NATURE METHODS

Expansion of Biological Pathways Based on Evolutionary Inference

(2014) Yang Li et al.   CELL

Proteomic Mapping of the Human Mitochondrial Intermembrane Space in Live Cells via Ratiometric APEX Tagging

(2014) Victoria Hung et al.   MOLECULAR CELL

GeneFriends: a human RNA-seq-based gene and transcript co-expression database

(2014) Sipko van Dam et al.   NUCLEIC ACIDS RESEARCH

COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems

(2014) Yasunobu Okamura et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Population of ATP synthase molecules in mitochondria is limited by available 6.8-kDa proteolipid protein (MLQ)

(2013) Makoto Fujikawa et al.   GENES TO CELLS

CLYBL is a polymorphic human enzyme with malate synthase and β-methylmalate synthase activity

(2013) Laura Strittmatter et al.   HUMAN MOLECULAR GENETICS

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

MICU2, a Paralog of MICU1, Resides within the Mitochondrial Uniporter Complex to Regulate Calcium Handling

(2013) Molly Plovanich et al.   PLoS One

EMRE Is an Essential Component of the Mitochondrial Calcium Uniporter Complex

(2013) Y. Sancak et al.   SCIENCE

Robust rank aggregation for gene list integration and meta-analysis

(2012) Raivo Kolde et al.   BIOINFORMATICS

GeneFriends: An online co-expression analysis tool to identify novel gene targets for aging and complex diseases

(2012) Sipko van Dam et al.   BMC GENOMICS

A Census of Human Soluble Protein Complexes

(2012) Pierre C. Havugimana et al.   CELL

A PGC-1α Isoform Induced by Resistance Training Regulates Skeletal Muscle Hypertrophy

(2012) Jorge L. Ruas et al.   CELL

Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter

(2011) Joshua M. Baughman et al.   NATURE

Sperm proteasome and fertilization

(2011) Peter Sutovsky   REPRODUCTION

Mitochondrial ATP synthase deficiency due to a mutation in the ATP5E gene for the F1   subunit

(2010) J. A. Mayr et al.   HUMAN MOLECULAR GENETICS

MICU1 encodes a mitochondrial EF hand protein required for Ca2+ uptake

(2010) Fabiana Perocchi et al.   NATURE

NCBI GEO: archive for functional genomics data sets--10 years on

(2010) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Thioredoxin Txnl1/TRP32 Is a Redox-active Cofactor of the 26 S Proteasome

(2009) Katrine M. Andersen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Computational Screen for Regulators of Oxidative Phosphorylation Implicates SLIRP in Mitochondrial RNA Homeostasis

(2009) Joshua M. Baughman et al.   PLoS Genetics

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

(2009) Priit Adler et al.   GENOME BIOLOGY

A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology

(2008) David J. Pagliarini et al.   CELL

Fatty acid metabolism: target for metabolic syndrome

(2008) Salih J. Wakil et al.   JOURNAL OF LIPID RESEARCH

The COP9 signalosome: more than a protease

(2008) N WEI et al.   TRENDS IN BIOCHEMICAL SCIENCES