Widespread Genetic Incompatibilities between First-Step Mutations during Parallel Adaptation of Saccharomyces cerevisiae to a Common Environment

The genetics of speciation: Insights from Fisher's geometric model

(2016) Christelle Fraïsse et al.   EVOLUTION

Least-Squares Means: TheRPackagelsmeans

(2016) Russell V. Lenth   Journal of Statistical Software

Plasma membrane/cell wall perturbation activates a novel cell cycle checkpoint during G1 inSaccharomyces cerevisiae

(2016) Keiko Kono et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global genetic interaction network maps a wiring diagram of cellular function

(2016) M. Costanzo et al.   SCIENCE

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Adaptive Landscapes of Resistance Genes Change as Antibiotic Concentrations Change

(2015) Portia M. Mira et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive survey of condition-specific reproductive isolation reveals genetic incompatibility in yeast

(2015) Jing Hou et al.   Nature Communications

Properties of selected mutations and genotypic landscapes under Fisher's geometric model

(2014) François Blanquart et al.   EVOLUTION

Identification of Candidate Substrates for the Golgi Tul1 E3 Ligase Using Quantitative diGly Proteomics in Yeast

(2014) Zongtian Tong et al.   MOLECULAR & CELLULAR PROTEOMICS

Genetics of ecological divergence during speciation

(2014) Matthew E. Arnegard et al.   NATURE

Global epistasis makes adaptation predictable despite sequence-level stochasticity

(2014) S. Kryazhimskiy et al.   SCIENCE

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

Loss-of-heterozygosity facilitates passage through Haldane’s sieve for Saccharomyces cerevisiae undergoing adaptation

(2014) A. C. Gerstein et al.   Nature Communications

Mapping the Fitness Landscape of Gene Expression Uncovers the Cause of Antagonism and Sign Epistasis between Adaptive Mutations

(2014) Hsin-Hung Chou et al.   PLoS Genetics

Patterns of Epistasis between Beneficial Mutations in an Antibiotic Resistance Gene

(2013) Martijn F. Schenk et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mutational effects depend on ploidy level: all else is not equal

(2012) A. C. Gerstein   Biology Letters

Parallel Genetic Changes and Nonparallel Gene-Environment Interactions Characterize the Evolution of Drug Resistance in Yeast

(2012) A. C. Gerstein et al.   GENETICS

Hierarchical Modularity and the Evolution of Genetic Interactomes across Species

(2012) Colm J. Ryan et al.   MOLECULAR CELL

The Genetics of Hybrid Incompatibilities

(2011) Shamoni Maheshwari et al.   Annual Review of Genetics

The causes of epistasis

(2011) J. A. G. M. de Visser et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

(2011) H.-H. Chou et al.   SCIENCE

The genes underlying the process of speciation

(2011) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape

(2011) Daniel J. Kvitek et al.   PLoS Genetics

Identification of glycolaldehyde as the key inhibitor of bioethanol fermentation by yeast and genome-wide analysis of its toxicity

(2010) Lahiru N. Jayakody et al.   BIOTECHNOLOGY LETTERS

Determinants of Divergent Adaptation and Dobzhansky-Muller Interaction in Experimental Yeast Populations

(2010) James B. Anderson et al.   CURRENT BIOLOGY

Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes

(2010) Frank J. Poelwijk et al.   JOURNAL OF THEORETICAL BIOLOGY

Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana

(2009) D. Bikard et al.   SCIENCE

Evidence for Ecological Speciation and Its Alternative

(2009) D. Schluter   SCIENCE

Genome-wide deletion mutant analysis reveals genes required for respiratory growth, mitochondrial genome maintenance and mitochondrial protein synthesis in Saccharomyces cerevisiae

(2009) Sandra Merz et al.   GENOME BIOLOGY

Divergent adaptation promotes reproductive isolation among experimental populations of the filamentous fungus Neurospora

(2008) Jeremy R Dettman et al.   BMC EVOLUTIONARY BIOLOGY

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

(2008) Katy C Kao et al.   NATURE GENETICS

A comprehensive strategy enabling high-resolution functional analysis of the yeast genome

(2008) David K Breslow et al.   NATURE METHODS