Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae

Recent independent emergence of multiple multidrug-resistantSerratia marcescensclones within the United Kingdom and Ireland

(2016) Danesh Moradigaravand et al.   GENOME RESEARCH

Carbapenemase-producing Enterobacteriaceae in hospital wastewater: a reservoir that may be unrelated to clinical isolates

(2016) L. White et al.   JOURNAL OF HOSPITAL INFECTION

Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study

(2016) Yi-Yun Liu et al.   LANCET INFECTIOUS DISEASES

IntermingledKlebsiella pneumoniaePopulations Between Retail Meats and Human Urinary Tract Infections

(2015) Gregg S. Davis et al.   CLINICAL INFECTIOUS DISEASES

Isolation of an NDM-5-producing ST16Klebsiella pneumoniaefrom a Dutch patient without travel history abroad, August 2015

(2015) Erik Bathoorn et al.   Eurosurveillance

The Epidemiology of Carbapenem-Resistant Klebsiella pneumoniae Colonization and Infection among Long-Term Acute Care Hospital Residents

(2015) John P Mills et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Diversity and antibiotic resistance profiles of Pseudomonads from a hospital wastewater treatment plant

(2015) D.O. Santoro et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments

(2015) Anna Johnning et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Wastewater as a point source of antibiotic-resistance genes in the sediment of a freshwater lake

(2014) Nadine Czekalski et al.   ISME Journal

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Accumulation of mutations in DNA gyrase and topoisomerase IV genes contributes to fluoroquinolone resistance in Vibrio cholerae O139 strains

(2013) Yanyan Zhou et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

Rapid Expansion of KPC-2-Producing Klebsiella pneumoniae Isolates in Two Texas Hospitals due to Clonal Spread of ST258 and ST307 Lineages

(2013) Mariana Castanheira et al.   Microbial Drug Resistance

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

(2013) L. Rizzo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Hypervirulent (hypermucoviscous)Klebsiella pneumoniae

(2013) Alyssa S. Shon et al.   Virulence

The emergence of multidrug-resistant Klebsiella pneumoniae of international clones ST13, ST16, ST35, ST48 and ST101 in a teaching hospital in the Paris region

(2012) G. MARCADE et al.   EPIDEMIOLOGY AND INFECTION

Ecology of zoonoses: natural and unnatural histories

(2012) William B Karesh et al.   LANCET

The ferric aerobactin receptor IutA, a protein isolated on agarose column, is not essential for uropathogenic Escherichia coli infection

(2012) Taise Natali Landgraf et al.   Revista Latino-Americana de Enfermagem

Urban wastewater treatment plants as hotspots for the release of antibiotics in the environment: A review

(2012) I. Michael et al.   WATER RESEARCH

Emergence and Rapid Regional Spread of Klebsiella pneumoniae Carbapenemase-Producing Enterobacteriaceae

(2011) S. Y. Won et al.   CLINICAL INFECTIOUS DISEASES

The role of Klebsiella pneumoniae rmpA in capsular polysaccharide synthesis and virulence revisited

(2011) C.-R. Hsu et al.   MICROBIOLOGY-SGM

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Emergence of High Levels of Extended-Spectrum- -Lactamase-Producing Gram-Negative Bacilli in the Asia-Pacific Region: Data from the Study for Monitoring Antimicrobial Resistance Trends (SMART) Program, 2007

(2009) S. P. Hawser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH