Long Non-Coding RNAs Responsive to Witches’ Broom Disease in Paulownia tomentosa

Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance toPhytophthora infestansby co-expressing glutaredoxin

(2017) Jun Cui et al.   PLANT JOURNAL

Proteome Profiling of Paulownia Seedlings Infected with Phytoplasma

(2017) Xibing Cao et al.   Frontiers in Plant Science

Quantitative proteome-level analysis of paulownia witches’ broom disease with methyl methane sulfonate assistance reveals diverse metabolic changes during the infection and recovery processes

(2017) Zhe Wang et al.   PeerJ

Implications of polyploidy events on the phenotype, microstructure, and proteome of Paulownia australis

(2017) Zhe Wang et al.   PLoS One

Identification and dynamic expression profiling of microRNAs and target genes of Paulownia tomentosa in response to Paulownia witches’ broom disease

(2016) Guoqiang Fan et al.   ACTA PHYSIOLOGIAE PLANTARUM

Identification of microRNAs and their targets in Paulownia fortunei plants free from phytoplasma pathogen after methyl methane sulfonate treatment

(2016) Guoqiang Fan et al.   BIOCHIMIE

Population genomic analysis of gibberellin-responsive long non-coding RNAs inPopulus

(2016) Jiaxing Tian et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Analysis of Long Noncoding RNAs and Their Responses to Drought Stress in Cotton (Gossypium hirsutum L.)

(2016) Xuke Lu et al.   PLoS One

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

(2016) Raj Kumar Joshi et al.   PLoS One

Genome-wide long non-coding RNA screening, identification and characterization in a model microorganism Chlamydomonas reinhardtii

(2016) Hui Li et al.   Scientific Reports

Transcriptome analysis of the genes related to the morphological changes of Paulownia tomentosa plantlets infected with phytoplasma

(2015) Guoqiang Fan et al.   ACTA PHYSIOLOGIAE PLANTARUM

Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize

(2015) Chunyan Fan et al.   BMC GENOMICS

Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

(2015) Guoqiang Fan et al.   BMC GENOMICS

Phenylpropanoid metabolism, hormone biosynthesis and signal transduction-related genes play crucial roles in the resistance of Paulownia fortunei to paulownia witches’ broom phytoplasma infection

(2015) Guoqiang Fan et al.   Genes & Genomics

Discovery of microRNAs and transcript targets related to witches’ broom disease in Paulownia fortunei by high-throughput sequencing and degradome approach

(2015) Suyan Niu et al.   MOLECULAR GENETICS AND GENOMICS

Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypiumspp.)

(2015) Maojun Wang et al.   NEW PHYTOLOGIST

Plant–Pathogen Interaction-Related MicroRNAs and Their Targets Provide Indicators of Phytoplasma Infection in Paulownia tomentosa × Paulownia fortunei

(2015) Guoqiang Fan et al.   PLoS One

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

(2015) Jinyan Wang et al.   Scientific Reports

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

(2014) H. Wang et al.   GENOME RESEARCH

Identification of Genes Related to Paulownia Witches’ Broom by AFLP and MSAP

(2014) Xibing Cao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant-Pathogen Interaction, Circadian Rhythm, and Hormone-Related Gene Expression Provide Indicators of Phytoplasma Infection in Paulownia fortunei

(2014) Guoqiang Fan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa

(2014) Peng Shuai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Morphological Changes of Paulownia Seedlings Infected Phytoplasmas Reveal the Genes Associated with Witches' Broom through AFLP and MSAP

(2014) Xibing Cao et al.   PLoS One

Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.)

(2013) Hong Zhang et al.   MOLECULAR BIOLOGY REPORTS

Long noncoding RNAs responsive toFusarium oxysporuminfection inArabidopsis thaliana

(2013) Qian-Hao Zhu et al.   NEW PHYTOLOGIST

Transcriptomic Analysis of Paulownia Infected by Paulownia Witches'-Broom Phytoplasma

(2013) Hai-Qing Mou et al.   PLoS One

Discovery of Genes Related to Witches Broom Disease in Paulownia tomentosa × Paulownia fortunei by a De Novo Assembled Transcriptome

(2013) Rongning Liu et al.   PLoS One

Genome Regulation by Long Noncoding RNAs

(2012) John L. Rinn et al.   Annual Review of Biochemistry

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study

(2012) Lei Sun et al.   BMC BIOINFORMATICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

Genetic and serological analyses of elongation factor EF-Tu of paulownia witches’-broom phytoplasma (16SrI-D)

(2010) J. Wang et al.   PLANT PATHOLOGY

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

(2010) H. Jia et al.   RNA

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

RNAplex: a fast tool for RNA–RNA interaction search

(2008) Hakim Tafer et al.   BIOINFORMATICS

Molecular characterisation of two plasmids from paulownia witches’-broom phytoplasma and detection of a plasmid-encoded protein in infected plants

(2008) Cai-Li Lin et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses

(2008) B. Ben Amor et al.   GENOME RESEARCH

Phytoplasmas: bacteria that manipulate plants and insects

(2008) SASKIA A. HOGENHOUT et al.   MOLECULAR PLANT PATHOLOGY

A Role for a Menthone Reductase in Resistance against Microbial Pathogens in Plants

(2008) H. W. Choi et al.   PLANT PHYSIOLOGY