A worldwide phylogeography of the whiteworm lichens Thamnolia reveals three lineages with distinct habitats and evolutionary histories

Basidiomycete yeasts in the cortex of ascomycete macrolichens

(2016) Toby Spribille et al.   SCIENCE

Comparison of phylogeographical structures of a lichen-forming fungus and its green algal photobiont in western North America

(2015) Jin-Ming Chen et al.   JOURNAL OF BIOGEOGRAPHY

Clonal reproduction in fungi

(2015) John W. Taylor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

AliView: a fast and lightweight alignment viewer and editor for large datasets

(2014) Anders Larsson   BIOINFORMATICS

Phylogeography ofRamalina menziesii, a widely distributed lichen-forming fungus in western North America

(2014) Victoria L. Sork et al.   MOLECULAR ECOLOGY

The cryptic sexual strategies of human fungal pathogens

(2014) Iuliana V. Ene et al.   NATURE REVIEWS MICROBIOLOGY

Unravelling the Paradox of Loss of Genetic Variation during Invasion: Superclones May Explain the Success of a Clonal Invader

(2014) Valerie Caron et al.   PLoS One

A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0

(2014) Adam L. Bazinet et al.   SYSTEMATIC BIOLOGY

Rediscovery of pycnidia in Thamnolia vermicularis: implications for chemotype occurrence and distribution

(2013) Janice M. LORD et al.   LICHENOLOGIST

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pleistocene expansion of the bipolar lichenCetraria aculeatainto the Southern hemisphere

(2013) Fernando Fernández-Mendoza et al.   MOLECULAR ECOLOGY

Neogene-dominated diversification in neotropical montane lichens: Dating divergence events in the lichen-forming fungal genus Oropogon (Parmeliaceae)

(2012) Steven D. Leavitt et al.   AMERICAN JOURNAL OF BOTANY

Miocene divergence, phenotypically cryptic lineages, and contrasting distribution patterns in common lichen-forming fungi (Ascomycota: Parmeliaceae)

(2012) Steven D. Leavitt et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Lichen myco- and photobiont diversity and their relationships at the edge of life (McMurdo Dry Valleys, Antarctica)

(2012) Sergio Pérez-Ortega et al.   FEMS MICROBIOLOGY ECOLOGY

European phylogeography of the epiphytic lichen fungusLobaria pulmonariaand its green algal symbiont

(2012) Ivo Widmer et al.   MOLECULAR ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Glacial Survival of Boreal Trees in Northern Scandinavia

(2012) L. Parducci et al.   SCIENCE

Goodbye morphology? A paradigm shift in the delimitation of species in lichenized fungi

(2011) H. Thorsten Lumbsch et al.   FUNGAL DIVERSITY

Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata

(2011) F. FERNÁNDEZ-MENDOZA et al.   MOLECULAR ECOLOGY

Cryptic species in lichen-forming fungi

(2011) Ana Crespo et al.   IMA Fungus

Identity and genetic structure of the photobiont of the epiphytic lichen Ramalina menziesii on three oak species in southern California

(2010) Silke Werth et al.   AMERICAN JOURNAL OF BOTANY

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Two Trebouxia algae with different physiological performances are ever-present in lichen thalli of Ramalina farinacea. Coexistence versus Competition?

(2010) Leonardo M. Casano et al.   ENVIRONMENTAL MICROBIOLOGY

Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America

(2010) AARON B. A. SHAFER et al.   MOLECULAR ECOLOGY

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Assessing clonality and chemotype monophyly in Thamnolia (Icmadophilaceae)

(2009) Matthew P. Nelsen et al.   BRYOLOGIST

Symbiont flexibility in Thamnolia vermicularis (Pertusariales: Icmadophilaceae)

(2009) Matthew P. Nelsen et al.   BRYOLOGIST

Uncharted terrain: the phylogeography of arctic and boreal lichens

(2009) Christian Printzen   Plant Ecology & Diversity

Dispersal in a sterile lichen-forming fungus, Thamnolia subuliformis (Ascomycotina: Icmadophilaceae)This paper is one of a selection of papers published in the Special Issue on Systematics Research.

(2008) David M. Cassie et al.   Botany