Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis

(2016) Ruby Ponnudurai et al.   ISME Journal

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Origins and Evolutionary Flexibility of Chemosynthetic Symbionts From Deep-Sea Animals

(2016) Jillian M. Petersen et al.   BIOLOGICAL BULLETIN

PECAS: prokaryotic and eukaryotic classical analysis of secretome

(2015) Ana R. Cortazar et al.   AMINO ACIDS

Bathymodiolus growth dynamics in relation to environmental fluctuations in vent habitats

(2015) K. Nedoncelle et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels

(2015) Lizbeth Sayavedra et al.   eLife

gbtools: Interactive Visualization of Metagenome Bins in R

(2015) Brandon K. B. Seah et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

(2012) M. Kleiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physiological homogeneity among the endosymbionts of Riftia pachyptila and Tevnia jerichonana revealed by proteogenomics

(2011) Antje Gardebrecht et al.   ISME Journal

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont

(2011) Stephanie Markert et al.   PROTEOMICS

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

(2010) Raul Bettencourt et al.   BMC GENOMICS

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY