Insight into the essential role of the Helicobacter pylori HP1043 orphan response regulator: genome-wide identification and characterization of the DNA-binding sites

Local and global regulation of transcription initiation in bacteria

(2016) Douglas F. Browning et al.   NATURE REVIEWS MICROBIOLOGY

Evolution of bacterial transcription factors: how proteins take on new tasks, but do not always stop doing the old ones

(2015) Sandhya S. Visweswariah et al.   TRENDS IN MICROBIOLOGY

The allosteric behavior of Fur mediates oxidative stress signal transduction in Helicobacter pylori

(2015) Simone Pelliciari et al.   Frontiers in Microbiology

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Mutations to Essential Orphan Response Regulator HP1043 of Helicobacter pylori Result in Growth-Stage Regulatory Defects

(2013) Igor N. Olekhnovich et al.   INFECTION AND IMMUNITY

Response to Metronidazole and Oxidative Stress Is Mediated through Homeostatic Regulator HsrA (HP1043) in Helicobacter pylori

(2013) I. N. Olekhnovich et al.   JOURNAL OF BACTERIOLOGY

Life in the human stomach: persistence strategies of the bacterial pathogen Helicobacter pylori

(2013) Nina R. Salama et al.   NATURE REVIEWS MICROBIOLOGY

FeON-FeOFF: the Helicobacter pylori Fur regulator commutates iron-responsive transcription by discriminative readout of opposed DNA grooves

(2013) F. Agriesti et al.   NUCLEIC ACIDS RESEARCH

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Review article: common misconceptions in the management of Helicobacter pylori-associated gastric MALT-lymphoma

(2011) J. P. Gisbert et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

CbpA Acts as a Modulator of HspR Repressor DNA Binding Activity in Helicobacter pylori

(2011) D. Roncarati et al.   JOURNAL OF BACTERIOLOGY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

Helicobacter pyloriNikR’s Interaction with DNA: A Two-Tiered Mode of Recognition†

(2009) Nuvjeevan S. Dosanjh et al.   BIOCHEMISTRY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology