Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases

Systematic Review and Meta-analysis

(2017) Neeraj Narula et al.   INFLAMMATORY BOWEL DISEASES

Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens

(2017) Yun-Gi Kim et al.   SCIENCE

Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced Disruptions

(2017) Jocelyn M. Choo et al.   mSphere

Fecal microbial transplant for the treatment of pediatric inflammatory bowel disease

(2016) Alice Yuxin Wang et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Role of antibiotics for treatment of inflammatory bowel disease

(2016) Orna Nitzan   WORLD JOURNAL OF GASTROENTEROLOGY

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals

(2016) Kate L. Ormerod et al.   Microbiome

SpinCouple: Development of a Web Tool for Analyzing Metabolite Mixtures via Two-Dimensional J-Resolved NMR Database

(2015) Jun Kikuchi et al.   ANALYTICAL CHEMISTRY

Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial

(2015) Paul Moayyedi et al.   GASTROENTEROLOGY

Identification of Reliable Components in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS): a Data-Driven Approach across Metabolic Processes

(2015) Hiromi Motegi et al.   Scientific Reports

Probiotic Bifidobacterium longum alters gut luminal metabolism through modification of the gut microbial community

(2015) Hirosuke Sugahara et al.   Scientific Reports

Weight Gain After Fecal Microbiota Transplantation

(2015) N. Alang et al.   Open Forum Infectious Diseases

The Gut Commensal Bacteroides thetaiotaomicron Exacerbates Enteric Infection through Modification of the Metabolic Landscape

(2014) Meredith M. Curtis et al.   Cell Host & Microbe

Gut Microbiota-Produced Succinate Promotes C. difficile Infection after Antibiotic Treatment or Motility Disturbance

(2014) Jessica A. Ferreyra et al.   Cell Host & Microbe

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Multiple Omics Uncovers Host–Gut Microbial Mutualism During Prebiotic Fructooligosaccharide Supplementation

(2014) Tamotsu Kato et al.   DNA RESEARCH

Activation of Gpr109a, Receptor for Niacin and the Commensal Metabolite Butyrate, Suppresses Colonic Inflammation and Carcinogenesis

(2014) Nagendra Singh et al.   IMMUNITY

Inflammatory Bowel Disease: Mechanisms, Redox Considerations, and Therapeutic Targets

(2013) Fiorella Biasi et al.   ANTIOXIDANTS & REDOX SIGNALING

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Microbiota-derived lactate accelerates colon epithelial cell turnover in starvation-refed mice

(2013) Toshihiko Okada et al.   Nature Communications

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

(2012) David Berry et al.   ISME Journal

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Commensal Bacteroides Species Induce Colitis in Host-Genotype-Specific Fashion in a Mouse Model of Inflammatory Bowel Disease

(2011) Seth M. Bloom et al.   Cell Host & Microbe

Statistical Indices for Simultaneous Large-Scale Metabolite Detections for a Single NMR Spectrum

(2010) Eisuke Chikayama et al.   ANALYTICAL CHEMISTRY

Gut microbial diversity is reduced by the probiotic VSL#3 and correlates with decreased TNBS-induced colitis

(2010) Joshua M. Uronis et al.   INFLAMMATORY BOWEL DISEASES

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species

(2010) K. Atarashi et al.   SCIENCE

Approaches to the study of the systematics of anaerobic, Gram-negative, non-sporeforming rods: Current status and perspectives

(2009) Haroun N. Shah et al.   ANAEROBE

Reduced microbial diversity and high numbers of one singleEscherichia colistrain in the intestine of colitic mice

(2009) Steffen Wohlgemuth et al.   ENVIRONMENTAL MICROBIOLOGY

Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43

(2009) Kendle M. Maslowski et al.   NATURE

Evaluation and Characterization of Bacterial Metabolic Dynamics with a Novel Profiling Technique, Real-Time Metabolotyping

(2009) Shinji Fukuda et al.   PLoS One

Metagenomic Approaches for Defining the Pathogenesis of Inflammatory Bowel Diseases

(2008) Daniel A. Peterson et al.   Cell Host & Microbe

Systematic NMR Analysis of Stable Isotope Labeled Metabolite Mixtures in Plant and Animal Systems: Coarse Grained Views of Metabolic Pathways

(2008) Eisuke Chikayama et al.   PLoS One

Bacterial Biofilm Suppression with Antibiotics for Ulcerative and Indeterminate Colitis: Consequences of Aggressive Treatment

(2007) Alexander Swidsinski et al.   ARCHIVES OF MEDICAL RESEARCH