Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells

Early Kinetics of the HLA Class I-Associated Peptidome of MVA.HIVconsv-Infected Cells

(2015) Nicola Ternette et al.   JOURNAL OF VIROLOGY

Conserved immunogens in prime-boost strategies for the next-generation HIV-1 vaccines

(2014) Tomáš Hanke   EXPERT OPINION ON BIOLOGICAL THERAPY

Direct Interrogation of Viral Peptides Presented by the Class I HLA of HIV-Infected T Cells

(2014) J. C. Yaciuk et al.   JOURNAL OF VIROLOGY

HLA-Specific Intracellular Epitope Processing Shapes an Immunodominance Pattern for HLA-B*57 That Is Distinct from HLA-B*58:01

(2013) H. N. Kloverpris et al.   JOURNAL OF VIROLOGY

Vaccine-elicited Human T Cells Recognizing Conserved Protein Regions Inhibit HIV-1

(2013) Nicola Borthwick et al.   MOLECULAR THERAPY

The T-Cell Response to HIV

(2013) B. Walker et al.   Cold Spring Harbor Perspectives in Medicine

Antiviral Inhibitory Capacity of CD8+ T cells Predicts the Rate of CD4+ T-Cell Decline in HIV-1 Infection

(2012) Hongbing Yang et al.   JOURNAL OF INFECTIOUS DISEASES

PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

(2011) Jing Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Direct quantitation of MHC-bound peptide epitopes by selected reaction monitoring

(2011) Chor Teck Tan et al.   PROTEOMICS

HLArestrictor—a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides

(2010) Malene Erup Larsen et al.   IMMUNOGENETICS

Viral adaptation to immune selection pressure by HLA class I–restricted CTL responses targeting epitopes in HIV frameshift sequences

(2010) Christoph T. Berger et al.   JOURNAL OF EXPERIMENTAL MEDICINE

HLA class I molecules reflect an altered host proteome after influenza virus infection

(2009) Angela Wahl et al.   HUMAN IMMUNOLOGY

The peptide length specificity of some HLA class I alleles is very broad and includes peptides of up to 25 amino acids in length

(2009) Melissa J. Bell et al.   MOLECULAR IMMUNOLOGY

Discovery of naturally processed and HLA-presented class I peptides from vaccinia virus infection using mass spectrometry for vaccine development

(2009) Kenneth L. Johnson et al.   VACCINE

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers

(2008) C. Lundegaard et al.   BIOINFORMATICS

ProteoWizard: open source software for rapid proteomics tools development

(2008) Darren Kessner et al.   BIOINFORMATICS

MHC motif viewer

(2008) Nicolas Rapin et al.   IMMUNOGENETICS

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11

(2008) Claus Lundegaard et al.   NUCLEIC ACIDS RESEARCH

Broad and Gag-Biased HIV-1 Epitope Repertoires Are Associated with Lower Viral Loads

(2008) Morgane Rolland et al.   PLoS One

Preferential binding of unusually long peptides to MHC class I and its influence on the selection of target peptides for T cell recognition

(2007) Jacqueline M. Burrows et al.   MOLECULAR IMMUNOLOGY