Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum

Evolutionary consequences of polyploidy in prokaryotes and the origin of mitosis and meiosis

(2016) Alexander V. Markov et al.   Biology Direct

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

How Clonal Is Clonal? Genome Plasticity across Multicellular Segments of a “Candidatus Marithrix sp.” Filament from Sulfidic, Briny Seafloor Sediments in the Gulf of Mexico

(2016) Verena Salman-Carvalho et al.   Frontiers in Microbiology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh

(2015) Verena Salman et al.   ISME Journal

Metabolic diversity and ecological niches of Achromatium populations revealed with single-cell genomic sequencing

(2015) Muammar Mansor et al.   Frontiers in Microbiology

Polyploidy in Archaea and Bacteria: About Desiccation Resistance, Giant Cell Size, Long-Term Survival, Enforcement by a Eukaryotic Host and Additional Aspects

(2015) Jörg Soppa   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Compartmentalization and organelle formation in bacteria

(2014) Elias Cornejo et al.   CURRENT OPINION IN CELL BIOLOGY

The Dynamic Nature of Genomes across the Tree of Life

(2014) A. M. Oliverio et al.   Genome Biology and Evolution

Polyploidy in haloarchaea: advantages for growth and survival

(2014) Karolin Zerulla et al.   Frontiers in Microbiology

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Whole genome comparison of sixCrocosphaera watsoniistrains with differing phenotypes

(2013) Shellie R. Bench et al.   JOURNAL OF PHYCOLOGY

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily

(2013) Michael Chandler et al.   NATURE REVIEWS MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria

(2013) Yang Fu et al.   NUCLEIC ACIDS RESEARCH

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota

(2013) J. H. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes

(2012) Feng Gao et al.   NUCLEIC ACIDS RESEARCH

Microbial and Chemical Characterization of Underwater Fresh Water Springs in the Dead Sea

(2012) Danny Ionescu et al.   PLoS One

Multiple self-splicing introns in the 16S rRNA genes of giant sulfur bacteria

(2012) V. Salman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Binning of Metagenomic Contigs for Microbial Physiology of Mixed Cultures

(2012) Marc Strous et al.   Frontiers in Microbiology

Gene conversion results in the equalization of genome copies in the polyploid haloarchaeon Haloferax volcanii

(2011) Christian Lange et al.   MOLECULAR MICROBIOLOGY

DNA Replication and Genomic Architecture of Very Large Bacteria

(2010) Esther R. Angert   Annual Review of Microbiology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Cyanobacterial Heterocysts

(2010) K. Kumar et al.   Cold Spring Harbor Perspectives in Biology

Gene Amplification and Adaptive Evolution in Bacteria

(2009) Dan I. Andersson et al.   Annual Review of Genetics

Recombination and Replication in DNA Repair of Heavily Irradiated Deinococcus radiodurans

(2009) Dea Slade et al.   CELL

Diversity of 23S rRNA Genes within Individual Prokaryotic Genomes

(2009) Anna Pei et al.   PLoS One

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Extreme polyploidy in a large bacterium

(2008) J. E. Mendell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA