A comparative study of gut microbiota profiles of earthworms fed in three different substrates

Characterization of the bacterial communities of casts from Eisenia andrei fed with different substrates

(2016) Manuel Aira et al.   APPLIED SOIL ECOLOGY

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Taxonomic composition and physiological and biochemical properties of bacteria in the digestive tracts of earthworms

(2015) B. A. Byzov et al.   EURASIAN SOIL SCIENCE

The effects of earthworms Eisenia spp. on microbial community are habitat dependent

(2015) Anna Koubová et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Taxonomic and functional annotation of gut bacterial communities of Eisenia foetida and Perionyx excavatus

(2015) Arjun Singh et al.   MICROBIOLOGICAL RESEARCH

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Do diet and taxonomy influence insect gut bacterial communities?

(2012) D. R. Colman et al.   MOLECULAR ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The role of the gut microbiota in nutrition and health

(2012) Harry J. Flint et al.   Nature Reviews Gastroenterology & Hepatology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Culturable microorganisms from the earthworm digestive tract

(2011) B. A. Byzov et al.   MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Diet, gut microbiota and immune responses

(2010) Kendle M Maslowski et al.   NATURE IMMUNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut wall bacteria of earthworms: a natural selection process

(2009) Dwipendra Thakuria et al.   ISME Journal

A Feeding Induced Switch from a Variable to a Homogenous State of the Earthworm Gut Microbiota within a Host Population

(2009) Knut Rudi et al.   PLoS One

Topographical and Temporal Diversity of the Human Skin Microbiome

(2009) E. A. Grice et al.   SCIENCE

Diet-related composition of the gut microbiota of Lumbricus rubellus as revealed by a molecular fingerprinting technique and cloning

(2009) B.A. Knapp et al.   SOIL BIOLOGY & BIOCHEMISTRY

Application of denaturing gradient gel electrophoresis for analysing the gut microflora of Lumbricus rubellus Hoffmeister under different feeding conditions

(2008) B.A. Knapp et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE