Bacterial virulence phenotypes of Escherichia coli and host susceptibility determine risk for urinary tract infections

Strengths and Limitations of Model Systems for the Study of Urinary Tract Infections and Related Pathologies

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A mucosal imprint left by prior Escherichia coli bladder infection sensitizes to recurrent disease

(2016) Valerie P. O'Brien et al.   Nature Microbiology

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Individual intestinal symbionts induce a distinct population of ROR + regulatory T cells

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Examination of the Enterotoxigenic Escherichia coli Population Structure during Human Infection

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Host Characteristics and Bacterial Traits Predict Experimental Virulence for Escherichia coli Bloodstream Isolates From Patients With Urosepsis

(2015) James R. Johnson et al.   Open Forum Infectious Diseases

Drug resistance and virulence of uropathogenic Escherichia coli from Shanghai, China

(2014) Yanchun Wang et al.   JOURNAL OF ANTIBIOTICS

Lipocalin 2 Imparts Selective Pressure on Bacterial Growth in the Bladder and Is Elevated in Women with Urinary Tract Infection

(2014) Magnus Steigedal et al.   JOURNAL OF IMMUNOLOGY

Pilicide ec240 Disrupts Virulence Circuits in Uropathogenic Escherichia coli

(2014) Sarah E. Greene et al.   mBio

In Vivo mRNA Profiling of Uropathogenic Escherichia coli from Diverse Phylogroups Reveals Common and Group-Specific Gene Expression Profiles

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Inhibition of Cyclooxygenase-2 Prevents Chronic and Recurrent Cystitis

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Urinary Tract Infection Syndromes

(2013) Betsy Foxman   INFECTIOUS DISEASE CLINICS OF NORTH AMERICA

Management of Urinary Tract Infections From Multidrug-Resistant Organisms

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Chaperone-Usher Fimbriae of Escherichia coli

(2013) Daniël J. Wurpel et al.   PLoS One

Positively selected FimH residues enhance virulence during urinary tract infection by altering FimH conformation

(2013) D. J. Schwartz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Diversity and Fitness of E. coli Strains Recovered from the Intestinal and Urinary Tracts of Women with Recurrent Urinary Tract Infection

(2013) S. L. Chen et al.   Science Translational Medicine

Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains

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Detection of intracellular bacterial communities in a child withEscherichia colirecurrent urinary tract infections

(2013) Luciana Robino et al.   Pathogens and Disease

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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Molecular Structure and Function of the Novel BrnT/BrnA Toxin-Antitoxin System ofBrucella abortus

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Similarity and Divergence of Phylogenies, Antimicrobial Susceptibilities, and Virulence Factor Profiles of Escherichia coli Isolates Causing Recurrent Urinary Tract Infections That Persist or Result from Reinfection

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Escherichia coli Lacking RpoS Are Rare in Natural Populations of Non-Pathogens

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International Clinical Practice Guidelines for the Treatment of Acute Uncomplicated Cystitis and Pyelonephritis in Women: A 2010 Update by the Infectious Diseases Society of America and the European Society for Microbiology and Infectious Diseases

(2011) Kalpana Gupta et al.   CLINICAL INFECTIOUS DISEASES

Population Dynamics and Niche Distribution of Uropathogenic Escherichia coli during Acute and Chronic Urinary Tract Infection

(2011) Drew J. Schwartz et al.   INFECTION AND IMMUNITY

Evaluating Ortholog Prediction Algorithms in a Yeast Model Clade

(2011) Leonidas Salichos et al.   PLoS One

Characteristics ofEscherichia colicausing persistence or relapse of urinary tract infections: Phylogenetic groups, virulence factors and biofilm formation

(2011) Karen Ejrnæs et al.   Virulence

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Persisting clones of Escherichia coli isolates from recurrent urinary tract infection in men and women

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Genome dynamics and its impact on evolution of Escherichia coli

(2010) Ulrich Dobrindt et al.   MEDICAL MICROBIOLOGY AND IMMUNOLOGY

Early Severe Inflammatory Responses to Uropathogenic E. coli Predispose to Chronic and Recurrent Urinary Tract Infection

(2010) Thomas J. Hannan et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

Prospective Cohort Study of Microbial and Inflammatory Events Immediately PrecedingEscherichia coliRecurrent Urinary Tract Infection in Women

(2009) C. A. Czaja et al.   JOURNAL OF INFECTIOUS DISEASES

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A murine model of urinary tract infection

(2009) Chia-Suei Hung et al.   Nature Protocols

Toll-Like Receptor Polymorphisms and Susceptibility to Urinary Tract Infections in Adult Women

(2009) Thomas R. Hawn et al.   PLoS One

Positive selection identifies an in vivo role for FimH during urinary tract infection in addition to mannose binding

(2009) Swaine L. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH