In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology

A Density Map of the Tick-Borne Encephalitis and Lyme Borreliosis VectorIxodes ricinus(Acari: Ixodidae) for Germany

(2016) Katharina Brugger et al.   JOURNAL OF MEDICAL ENTOMOLOGY

Human pathogens associated with the blacklegged tick Ixodes scapularis: a systematic review

(2016) Mark P. Nelder et al.   Parasites & Vectors

All For One and One For All on the Tick–Host Battlefield

(2016) Jindřich Chmelař et al.   TRENDS IN PARASITOLOGY

Genomic insights into the Ixodes scapularis tick vector of Lyme disease

(2016) Monika Gulia-Nuss et al.   Nature Communications

TRP channels: potential drug target for neuropathic pain

(2016) Lovish Marwaha et al.   INFLAMMOPHARMACOLOGY

Concurrent micro-RNA mediated silencing of tick-borne flavivirus replication in tick vector and in the brain of vertebrate host

(2016) Konstantin A. Tsetsarkin et al.   Scientific Reports

Comparative Profiling of MicroRNAs in Male and Female Rhipicephalus sanguineus

(2015) Chang-Chun Shao et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naïve midgut

(2015) Wibke J. Cramaro et al.   BMC GENOMICS

Emerging horizons for tick-borne pathogens: from the ‘one pathogen–one disease’ vision to the pathobiome paradigm

(2015) Muriel Vayssier-Taussat et al.   Future Microbiology

Identification and characterization of microRNAs by deep-sequencing in Hyalomma anatolicum anatolicum (Acari: Ixodidae) ticks

(2015) Jin Luo et al.   GENE

Roles of small RNAs in the immune defense mechanisms of crustaceans

(2015) Yaodong He et al.   MOLECULAR IMMUNOLOGY

GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

(2015) Patricia P. Chan et al.   NUCLEIC ACIDS RESEARCH

sRNAtoolbox: an integrated collection of small RNA research tools

(2015) Antonio Rueda et al.   NUCLEIC ACIDS RESEARCH

Saliva from nymph and adult females of Haemaphysalis longicornis: a proteomic study

(2015) Lucas Tirloni et al.   Parasites & Vectors

Lipopolysaccharide-Induced Differential Expression of miRNAs in Male and Female Rhipicephalus haemaphysaloides Ticks

(2015) Fangfang Wang et al.   PLoS One

The Role of RNA Interference (RNAi) in Arbovirus-Vector Interactions

(2015) Carol Blair et al.   Viruses-Basel

Ticks and tick-borne pathogens in South Bohemia (Czech Republic) – Spatial variability in Ixodes ricinus abundance, Borrelia burgdorferi and tick-borne encephalitis virus prevalence

(2015) V. Hönig et al.   Ticks and Tick-Borne Diseases

Tissue- and time-dependent transcription in Ixodes ricinus salivary glands and midguts when blood feeding on the vertebrate host

(2015) Michalis Kotsyfakis et al.   Scientific Reports

Deep Sequencing Analysis of the Ixodes ricinus Haemocytome

(2015) Michalis Kotsyfakis et al.   PLoS Neglected Tropical Diseases

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva

(2014) Lwiindi Mudenda et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

A Systems Level Analysis Reveals Transcriptomic and Proteomic Complexity inIxodes RicinusMidgut and Salivary Glands During Early Attachment and Feeding

(2014) Alexandra Schwarz et al.   MOLECULAR & CELLULAR PROTEOMICS

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

(2014) Gloria I. Giraldo-Calderón et al.   NUCLEIC ACIDS RESEARCH

RNAcentral: an international database of ncRNA sequences

(2014)   NUCLEIC ACIDS RESEARCH

Proteomic Analysis of Cattle Tick Rhipicephalus (Boophilus) microplus Saliva: A Comparison between Partially and Fully Engorged Females

(2014) Lucas Tirloni et al.   PLoS One

Role of microRNAs in Arbovirus/Vector Interactions

(2014) Sassan Asgari   Viruses-Basel

Nontemplated Nucleotide Additions Distinguish the Small RNA Composition in Cells from Exosomes

(2014) Danijela Koppers-Lalic et al.   Cell Reports

Ticks and tick-borne pathogens at the cutaneous interface: host defenses, tick countermeasures, and a suitable environment for pathogen establishment

(2013) Stephen Wikel   Frontiers in Microbiology

Insect MicroRNAs: Biogenesis, expression profiling and biological functions

(2012) Keira Lucas et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries

(2012) Gavriel Mullokandov et al.   NATURE METHODS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

(2011) Roberto A Barrero et al.   BMC GENOMICS

The thermo-TRP ion channel family: properties and therapeutic implications

(2011) Laura Vay et al.   BRITISH JOURNAL OF PHARMACOLOGY

Deconstructing Tick Saliva

(2011) Carlo José F. Oliveira et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

(2011) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

TargetSpy: a supervised machine learning approach for microRNA target prediction

(2010) Martin Sturm et al.   BMC BIOINFORMATICS

Got target?: computational methods for microRNA target prediction and their extension

(2010) Hyeyoung Min et al.   EXPERIMENTAL AND MOLECULAR MEDICINE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Tick saliva affects both proliferation and distribution of Borrelia burgdorferi spirochetes in mouse organs and increases transmission of spirochetes to ticks

(2009) Helena Horká et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY