Different utilization of alginate and other algal polysaccharides by marineAlteromonas macleodiiecotypes

Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans

(2015) Matthias Wietz et al.   ENVIRONMENTAL MICROBIOLOGY

Ecophysiological diversity of a novel member of the genus Alteromonas, and description of Alteromonas mediterranea sp. nov.

(2014) Elena P. Ivanova et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications

(2014) Marjolaine Martin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

RNA sequencing provides evidence for functional variability between naturally co-existing Alteromonas macleodii lineages

(2014) Nikole E Kimes et al.   BMC GENOMICS

A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae

(2014) Jan-Hendrik Hehemann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Composition and enzymatic function of particle-associated and free-living bacteria: a coastal/offshore comparison

(2014) Lindsay D'Ambrosio et al.   ISME Journal

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides

(2013) Alexander J. Mann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

(2013) Bruno Contreras-Moreira et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

(2013) Sergey I Nikolenko et al.   BMC GENOMICS

Genomic Diversity of “Deep Ecotype” Alteromonas macleodii Isolates: Evidence for Pan-Mediterranean Clonal Frames

(2013) Mario López-Pérez et al.   Genome Biology and Evolution

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

(2013) Amy E Zimmerman et al.   ISME Journal

Comparative Characterization of Two Marine Alginate Lyases fromZobellia galactanivoransReveals Distinct Modes of Action and Exquisite Adaptation to Their Natural Substrate

(2013) François Thomas et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

IMG/M 4 version of the integrated metagenome comparative analysis system

(2013) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

A Hybrid NRPS-PKS Gene Cluster Related to the Bleomycin Family of Antitumor Antibiotics in Alteromonas macleodii Strains

(2013) Carolina Megumi Mizuno et al.   PLoS One

Characterization of the first alginolytic operons in a marine bacterium: from their emergence in marine Flavobacteriia to their independent transfers to marine Proteobacteria and human gut Bacteroides

(2012) François Thomas et al.   ENVIRONMENTAL MICROBIOLOGY

Use of phytoplankton-derived dissolved organic carbon by different types of bacterioplankton

(2012) Hugo Sarmento et al.   ENVIRONMENTAL MICROBIOLOGY

Polyclonality of Concurrent Natural Populations of Alteromonas macleodii

(2012) Aitor Gonzaga et al.   Genome Biology and Evolution

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Peculiarities of Alteromonas macleodii strains reflects their deep/surface habitation rather than geographical distribution

(2012) Vitalii V. Klochko et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Bacterial quorum sensing, cooperativity, and anticipation of stationary-phase stress

(2012) E. Goo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph

(2012) Mario López-Pérez et al.   Scientific Reports

[NiFe] Hydrogenase fromAlteromonas macleodiiwith Unusual Stability in the Presence of Oxygen and High Temperature

(2011) Walter A. Vargas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tropodithietic Acid Production in Phaeobacter gallaeciensis Is Regulated by N-Acyl Homoserine Lactone-Mediated Quorum Sensing

(2011) M. Berger et al.   JOURNAL OF BACTERIOLOGY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Metabolite Identification inSynechococcus sp. PCC 7002Using Untargeted Stable Isotope Assisted Metabolite Profiling

(2010) Richard Baran et al.   ANALYTICAL CHEMISTRY

A hierarchical classification of polysaccharide lyases for glycogenomics

(2010) Vincent Lombard et al.   BIOCHEMICAL JOURNAL

Structural and mechanistic classification of uronic acid-containing polysaccharide lyases

(2010) M.-L. Garron et al.   GLYCOBIOLOGY

Chemical interactions between marine macroalgae and bacteria

(2010) F Goecke et al.   MARINE ECOLOGY PROGRESS SERIES

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

Distribution ofRoseobacterRCA and SAR11 lineages and distinct bacterial communities from the subtropics to the Southern Ocean

(2009) Helge-Ansgar Giebel et al.   ENVIRONMENTAL MICROBIOLOGY

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

(2009) Eric C. Martens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Growth phase-dependent global protein and metabolite profiles ofPhaeobacter gallaeciensisstrain DSM 17395, a member of the marineRoseobacter-clade

(2009) Hajo Zech et al.   PROTEOMICS

Microbes Enriched in Seawater after Addition of Coral Mucus

(2008) E. Allers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic analysis of bacteria associated with Laminaria saccharina

(2008) Tim Staufenberger et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter

(2008) Elena Ivars-Martinez et al.   ISME Journal

Biogeography of the ubiquitous marine bacteriumAlteromonas macleodiidetermined by multilocus sequence analysis

(2008) ELENA IVARS-MARTÍNEZ et al.   MOLECULAR ECOLOGY

Complete Genome Sequence of the Complex Carbohydrate-Degrading Marine Bacterium, Saccharophagus degradans Strain 2-40T

(2008) Ronald M. Weiner et al.   PLoS Genetics