Geological connectivity drives microbial community structure and connectivity in polar, terrestrial ecosystems

Climate change and the permafrost carbon feedback

(2015) E. A. G. Schuur et al.   NATURE

Community fingerprinting in a sequencing world

(2014) Josie van Dorst et al.   FEMS MICROBIOLOGY ECOLOGY

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

Impact of Matric Potential and Pore Size Distribution on Growth Dynamics of Filamentous and Non-Filamentous Soil Bacteria

(2014) Alexandra B. Wolf et al.   PLoS One

Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities

(2014) Steven D. Siciliano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Distinct microbial communities associated with buried soils in the Siberian tundra

(2013) Antje Gittel et al.   ISME Journal

Effects of environmental variation and spatial distance on Bacteria, Archaea and viruses in sub-polar and arctic waters

(2013) Christian Winter et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Contrasting primary successional trajectories of fungi and bacteria in retreating glacier soils

(2013) Shawn P. Brown et al.   MOLECULAR ECOLOGY

High Bacterial Diversity of Biological Soil Crusts in Water Tracks over Permafrost in the High Arctic Polar Desert

(2013) Blaire Steven et al.   PLoS One

Peeking through a frosty window: molecular insights into the ecology of Arctic soil fungi

(2012) Ina Timling et al.   Fungal Ecology

Effects of patch connectivity and heterogeneity on metacommunity structure of planktonic bacteria and viruses

(2012) Steven A J Declerck et al.   ISME Journal

Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms

(2012) Alexander Tveit et al.   ISME Journal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

A High Arctic soil ecosystem resists long-term environmental manipulations

(2011) ERIC G. LAMB et al.   GLOBAL CHANGE BIOLOGY

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

(2011) J Michael Beman et al.   ISME Journal

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Disentangling the spatial patterns in community composition of prokaryotic and eukaryotic lake plankton

(2011) Janne Soininen et al.   LIMNOLOGY AND OCEANOGRAPHY

Physical, chemical and microbial soil properties of frost boils at Browning Peninsula, Antarctica

(2011) Katherine J. Stewart et al.   POLAR BIOLOGY

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting Novel Associations in Large Data Sets

(2011) D. N. Reshef et al.   SCIENCE

Macroecology of unicellular organisms - patterns and processes

(2011) Janne Soininen   Environmental Microbiology Reports

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

(2010) R. Henrik Nilsson et al.   Fungal Ecology

Species sorting affects bacterioplankton community composition as determined by 16S rDNA and 16S rRNA fingerprints

(2010) Jürg B Logue et al.   ISME Journal

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Life history determines biogeographical patterns of soil bacterial communities over multiple spatial scales

(2010) A. BISSETT et al.   MOLECULAR ECOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Quantifying the relative importance of niches and neutrality for coexistence in a model microbial system

(2009) Quan-Guo Zhang et al.   FUNCTIONAL ECOLOGY

Vulnerability of Permafrost Carbon to Climate Change: Implications for the Global Carbon Cycle

(2008) Edward A. G. Schuur et al.   BIOSCIENCE

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease

Soils and frost boil ecosystems across the North American Arctic Transect

(2008) G. J. Michaelson et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Arctic patterned-ground ecosystems: A synthesis of field studies and models along a North American Arctic Transect

(2008) D. A. Walker et al.   JOURNAL OF GEOPHYSICAL RESEARCH