Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods
出版年份 2017 全文链接
标题
Assessment of hard target modeling in CASP12 reveals an emerging role of alignment-based contact prediction methods
作者
关键词
-
出版物
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 86, Issue -, Pages 97-112
出版商
Wiley
发表日期
2017-11-15
DOI
10.1002/prot.25423
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Protein structure determination using metagenome sequence data
- (2017) Sergey Ovchinnikov et al. SCIENCE
- Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
- (2017) Sheng Wang et al. PLoS Computational Biology
- Applications of contact predictions to structural biology
- (2017) Felix Simkovic et al. IUCrJ
- Structural, physicochemical and dynamic features conserved within the aerolysin pore-forming toxin family
- (2017) Nuria Cirauqui et al. Scientific Reports
- Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server
- (2016) Luciano A. Abriata et al. BMC BIOINFORMATICS
- Structured States of Disordered Proteins from Genomic Sequences
- (2016) Agnes Toth-Petroczy et al. CELL
- H4K20me0 marks post-replicative chromatin and recruits the TONSL–MMS22L DNA repair complex
- (2016) Giulia Saredi et al. NATURE
- Evaluation of free modeling targets in CASP11 and ROLL
- (2016) Lisa N. Kinch et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Critical assessment of methods of protein structure prediction: Progress and new directions in round XI
- (2016) John Moult et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- CASP11 statistics and the prediction center evaluation system
- (2016) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Bacterial flagellar capping proteins adopt diverse oligomeric states
- (2016) Sandra Postel et al. eLife
- Blind protein structure prediction using accelerated free-energy simulations
- (2016) A. Perez et al. Science Advances
- GtrA Protein Rv3789 Is Required for Arabinosylation of Arabinogalactan in Mycobacterium tuberculosis
- (2015) Gaëlle S. Kolly et al. JOURNAL OF BACTERIOLOGY
- Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4
- (2015) Sagar Antala et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- How Structural and Physicochemical Determinants Shape Sequence Constraints in a Functional Enzyme
- (2015) Luciano A. Abriata et al. PLoS One
- Alternative approach to protein structure prediction based on sequential similarity of physical properties
- (2015) Yi He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerating molecular simulations of proteins using Bayesian inference on weak information
- (2015) Alberto Perez et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Amino acid coevolution reveals three-dimensional structure and functional domains of insect odorant receptors
- (2015) Thomas A. Hopf et al. Nature Communications
- Large-scale determination of previously unsolved protein structures using evolutionary information
- (2015) Sergey Ovchinnikov et al. eLife
- Structure of a Functional Amyloid Protein Subunit Computed Using Sequence Variation
- (2014) Pengfei Tian et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- WeFold: A coopetition for protein structure prediction
- (2014) George A. Khoury et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- ECOD: An Evolutionary Classification of Protein Domains
- (2014) Hua Cheng et al. PLoS Computational Biology
- A structural model of the active ribosome-bound membrane protein insertase YidC
- (2014) Stephan Wickles et al. eLife
- Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
- (2014) Sergey Ovchinnikov et al. eLife
- Sequence co-evolution gives 3D contacts and structures of protein complexes
- (2014) Thomas A Hopf et al. eLife
- JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied toProteopedia
- (2013) Robert M. Hanson et al. ISRAEL JOURNAL OF CHEMISTRY
- Assessment of template-free modeling in CASP10 and ROLL
- (2013) Chin-Hsien Tai et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis
- (2012) A. E. Dago et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Protein 3D Structure Computed from Evolutionary Sequence Variation
- (2011) Debora S. Marks et al. PLoS One
- Direct-coupling analysis of residue coevolution captures native contacts across many protein families
- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CASP9 results compared to those of previous casp experiments
- (2011) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- CASP9 assessment of free modeling target predictions
- (2011) Lisa Kinch et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- How significant is a protein structure similarity with TM-score = 0.5?
- (2010) Jinrui Xu et al. BIOINFORMATICS
- Application of Multiplexed Replica Exchange Molecular Dynamics to the UNRES Force Field: Tests with α and α+β Proteins
- (2009) Cezary Czaplewski et al. Journal of Chemical Theory and Computation
- Assessment of CASP8 structure predictions for template free targets
- (2009) Moshe Ben-David et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started