Article
Biochemistry & Molecular Biology
Elena Ostertag, Liujuan Zheng, Karina Broger, Thilo Stehle, Shu-Ming Li, Georg Zocher
Summary: Prenylation plays a crucial role in primary and secondary metabolism, contributing to chemical diversity in natural systems. Recent structural studies on prenyltransferases shed light on their catalytic mechanisms and key residues, but the control of regioselectivity and chemoselectivity remains a challenge. Site-directed mutagenesis has been successfully utilized to modify prenyl donor specificity and switch the regioselectivity of prenyltransferases, showing potential for production of novel prenylated compounds.
JOURNAL OF MOLECULAR BIOLOGY
(2021)
Article
Chemistry, Applied
Efstratios Nikolaivits, Christina Pentari, Christos Kosinas, Christian G. Feiler, Maria Spiliopoulou, Manfred S. Weiss, Maria Dimarogona, Evangelos Topakas
Summary: The fungal xylanases belonging to family GH30_7, previously categorized as endo-glucuronoxylanases, have been found to possess dual activity, acting both endo- and exo- on the xylan backbone. Structural characteristics and biochemical properties of the GH30_7 xylanase TtXyn30A were studied, revealing the identification of an auxiliary catalytic amino acid and a different mechanism for glucuronic acid recognition compared to previously determined GH30 structures.
CARBOHYDRATE POLYMERS
(2021)
Article
Biochemistry & Molecular Biology
Johan Nilvebrant, June Ereno-Orbea, Maryna Gorelik, Mark C. Julian, Peter M. Tessier, Jean-Philippe Julien, Sachdev S. Sidhu
Summary: The study utilized autonomous human V-H domains as a scaffold to construct synthetic libraries and successfully identified multiple anti-EphA1 receptor V-H domains through selections. Structural analyses provided insights into the effects of preventing aggregation while retaining function. This systematic approach enables the generation of highly functional autonomous human V-H domains resistant to aggregation.
JOURNAL OF MOLECULAR BIOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Shruti Chatterjee, Shankar V. Kundapura, Aditya J. Basak, Debangshu Mukherjee, Sagarika Dash, Namrata Ganguli, Amit K. Das, Gayatri Mukherjee, Dibyendu Samanta, Udupi A. Ramagopal
Summary: Tuberculosis is a disease caused by Mycobacterium tuberculosis, primarily transmitted through inhaling droplets from infected individuals. Mycobacteria use pathogen-associated molecular patterns (PAMPs) on their surface to enter alveolar macrophages by recognizing pattern recognition receptors on host cells. One important PAMP is the 19 kDa surface antigen LpqH, which plays a critical role in host-pathogen interactions and immune regulation. This study presents the crystal structure of non-acylated LpqH and demonstrates its functionality in inducing apoptosis in human monocytic cell line THP-1. Conservation analysis reveals a patch of conserved residues on the protein surface, potentially involved in binding partner recognition during host-pathogen interaction.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2022)
Article
Chemistry, Multidisciplinary
Jingyao Li, Yaguang Zhu, Han Yu, Bin Dai, Young-Shin Jun, Fuzhong Zhang
Summary: Researchers have developed a new strategy for synthesizing amyloid proteins by fusing amyloid peptides with flexible linkers from spider silk proteins, resulting in fibers with strong mechanical properties. These fibers can be utilized for a variety of mechanically demanding applications, surpassing most recombinant protein fibers and even some natural spider silk fibers in terms of ultimate tensile strength and toughness.
Article
Multidisciplinary Sciences
Alex J. Vecchio, Sewwandi S. Rathnayake, Robert M. Stroud
Summary: The study reveals the molecular and structural basis of how CpE targets susceptible claudins, as well as differences in the primary CpE receptors in mice and humans due to sequence changes in the target motif.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2021)
Article
Biochemistry & Molecular Biology
Andreas Eichinger, Sabine Rauth, Dominik Hinz, Anna Feuerbach, Arne Skerra
Summary: In this study, the structural analysis of two Anticalin(R) proteins that tightly bind A beta(40) peptide, a key player in Alzheimer's disease, were described. These proteins, engineered based on human lipocalin 2, show compact single-domain binding properties and offer a potential alternative to antibodies. Both crystal structures of the engineered anticalins revealed their ability to recognize the same epitope in the middle of the beta-amyloid peptide. This finding suggests that anticalins may play a significant role in the pathophysiology of Alzheimer's disease.
BIOLOGICAL CHEMISTRY
(2022)
Article
Biochemistry & Molecular Biology
Yui Makura, Atsushi Ueda, Takuma Kato, Akihiro Iyoshi, Mei Higuchi, Mitsunobu Doi, Masakazu Tanaka
Summary: Hydrocarbon stapling at i, i + 1 positions was studied in this research, with different ring sizes and olefin-tethered amino acids leading to varied E/Z selectivities. X-ray crystallography demonstrated that the i, i + 1 staple stabilized the peptide into a right-handed alpha-helix structure.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Ze-Yuan Chen, Hong Yuan, Huamin Wang, Li-Juan Sun, Lu Yu, Shu-Qin Gao, Xiangshi Tan, Ying-Wu Lin
Summary: A simple method was developed to regulate the heme active site of heme protein by generating a cavity through the mutation of an amino acid, followed by covalent modifications with exogenous ligands. This approach efficiently modulated the heme coordination state and protein function, suggesting its potential applicability in the design of functional heme proteins.
Article
Multidisciplinary Sciences
Marina Abe, Ryo Suzuki, Keiichi Hirano, Haruhiko Koizumi, Kenichi Kojimaa, Masaru Tachibana
Summary: The growth of high-quality protein crystals is essential for protein structure analysis. Twisting is identified as one of the main residual defects in high-quality crystals, determining their perfection. The handedness of twisting may be attributed to the interaction of chiral protein molecules with asymmetric units in crystal forms. This study provides insights into the growth mechanism and control of high-quality crystals.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Biotechnology & Applied Microbiology
Efstratios Nikolaivits, Alexandros Valmas, Grigorios Dedes, Evangelos Topakas, Maria Dimarogona
Summary: Polyphenol oxidases are enzymes involved in postharvest browning of fruits and vegetables as well as human melanogenesis. Despite high structural similarity, tyrosinases and catechol oxidases show different catalytic activities. The crystal structure of a TtPPO variant provides insights into the enzyme's function against various substrates, highlighting the role of specific amino acids in the active site and improving understanding of microbial PPOs for future biocatalyst engineering.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2021)
Article
Chemistry, Physical
Matthew N. Podgorski, Joshua S. Harbort, Joel H. Z. Lee, Giang T. H. Nguyen, John B. Bruning, William A. Donald, Paul Bernhardt, Jeffrey R. Harmer, Stephen G. Bell
Summary: In this study, it was found that mutating a highly conserved threonine residue in CYP199A4 to glutamate can convert it to a peroxygenase and improve its peroxygenase activity. The crystal structure of the mutant demonstrated a change in spin state upon substrate binding, which was linked to the modification of the oxygen-binding groove and the retention of the iron-bound aqua ligand. The detailed characterization of this engineered heme peroxygenase will aid in the development of new methods for the selective C-H bond activation using heme enzymes.
Article
Chemistry, Multidisciplinary
Dario Ferreira Sanchez, Johannes Ihli, Damin Zhang, Thomas Rohrbach, Patric Zimmermann, Jinhee Lee, Camelia N. Borca, Natascha Bohlen, Daniel Grolimund, Jeroen A. van Bokhoven, Marco Ranocchiari
Summary: The introduction of structural defects in metal-organic frameworks (MOFs) through the fractional use of defective linkers can refine the properties of existing MOFs. Understanding the structure of defect-engineered MOFs is crucial for targeted property enhancement. Full-field X-ray absorption near-edge structure computed tomography can help visualize the chemical heterogeneity in defect-engineered MOF crystals, revealing non-uniform incorporation of defective linkers within the MOF.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2021)
Article
Chemistry, Multidisciplinary
Jonghyeon Son, Woong Choi, Hyun Kim, Minseo Kim, Jun Hyuck Lee, Seung Chul Shin, Han-Woo Kim
Summary: In this study, the crystal structures of the psychrophilic esterase PsEst3 were determined, and biochemical experiments were conducted to investigate its structure-function relationship. The results revealed unique characteristics of PsEst3, including conserved amino acid sequences, specific domain composition, and a positive electrostatic potential in the active site. These findings suggest that PsEst3 belongs to a distinct family of esterases.
Article
Chemistry, Inorganic & Nuclear
Vishwesh Mishra, Nitish Kumar Sinha, Natesan Thirupathi
Summary: By reacting with Hg(OC(O)CF3)(2), separate reactions of cycloplatinated 2-tolyl- and 2-anisylguanidine complexes yielded a one-dimensional coordination polymer and a discrete tetrametallic complex with different structures and properties. The formation mechanisms and structural characteristics of these products were explained in detail, with important characterization information provided by multinuclear NMR spectroscopy and single-crystal X-ray diffraction studies.
INORGANIC CHEMISTRY
(2021)