Linking species habitat and past palaeoclimatic events to evolution of the teleost innate immune system

Sequence-Specific Sensing of Nucleic Acids

(2017) Nicolas Vabret et al.   TRENDS IN IMMUNOLOGY

Whole genome sequencing data and de novo draft assemblies for 66 teleost species

(2017) Martin Malmstrøm et al.   Scientific Data

Successive Losses of Central Immune Genes Characterize the Gadiformes’ Alternate Immunity

(2016) Monica H. Solbakken et al.   Genome Biology and Evolution

Cell Signaling Pathways That Regulate Antigen Presentation

(2016) Randy R. Brutkiewicz   JOURNAL OF IMMUNOLOGY

Evolution of the immune system influences speciation rates in teleost fishes

(2016) Martin Malmstrøm et al.   NATURE GENETICS

The Evolving Theory of Evolutionary Radiations

(2016) M. Simões et al.   TRENDS IN ECOLOGY & EVOLUTION

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions

(2016) Monica H. Solbakken et al.   Scientific Reports

‘Fish’ (Actinopterygii and Elasmobranchii) diversification patterns through deep time

(2015) Guillaume Guinot et al.   BIOLOGICAL REVIEWS

The Cretaceous opening of the South Atlantic Ocean

(2015) Roi Granot et al.   EARTH AND PLANETARY SCIENCE LETTERS

Development of passive volcanic margins of the Central Atlantic and initial opening of ocean

(2015) E. N. Melankholina et al.   GEOTECTONICS

Beyond dsRNA: Toll-like receptor 3 signalling in RNA-induced immune responses

(2014) Megumi Tatematsu et al.   BIOCHEMICAL JOURNAL

Major issues in the origins of ray-finned fish (Actinopterygii) biodiversity

(2014) Lauren C. Sallan   BIOLOGICAL REVIEWS

Latitudinal gradients in climatic-niche evolution accelerate trait evolution at high latitudes

(2014) Adam M. Lawson et al.   ECOLOGY LETTERS

Antarctic glaciation caused ocean circulation changes at the Eocene–Oligocene transition

(2014) A. Goldner et al.   NATURE

Ensembl 2015

(2014) Fiona Cunningham et al.   NUCLEIC ACIDS RESEARCH

Ecological opportunity and the adaptive diversification of lineages

(2014) Gary A. Wellborn et al.   Ecology and Evolution

Faunal turnover of marine tetrapods during the Jurassic-Cretaceous transition

(2013) Roger B. J. Benson et al.   BIOLOGICAL REVIEWS

Absence of major histocompatibility complex class II mediated immunity in pipefish, Syngnathus typhle: evidence from deep transcriptome sequencing

(2013) D. Haase et al.   Biology Letters

Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish

(2013) Liandong Yang et al.   BMC GENOMICS

Ligand specificities of Toll-like receptors in fish: Indications from infection studies

(2013) Danilo Pietretti et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Tectonically restricted deep-ocean circulation at the end of the Cretaceous greenhouse

(2013) Silke Voigt et al.   EARTH AND PLANETARY SCIENCE LETTERS

The evolution of Late Cretaceous deep-ocean circulation in the Atlantic basins: Neodymium isotope evidence from South Atlantic drill sites for tectonic controls

(2013) Daniel P. Murphy et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Comprehensive survey and genomic characterization of Toll-like receptors (TLRs) in channel catfish, Ictalurus punctatus: identification of novel fish TLRs

(2013) Sylvie M. A. Quiniou et al.   IMMUNOGENETICS

Colonization of the deep sea by fishes

(2013) I. G. Priede et al.   JOURNAL OF FISH BIOLOGY

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

(2013) Brant C. Faircloth et al.   PLoS One

Unraveling the Evolution of the Atlantic Cod’s (Gadus morhua L.) Alternative Immune Strategy

(2013) Martin Malmstrøm et al.   PLoS One

Why does the immune system of Atlantic cod lack MHC II?

(2012) Bastiaan Star et al.   BIOESSAYS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Extinctions in ancient and modern seas

(2012) Paul G. Harnik et al.   TRENDS IN ECOLOGY & EVOLUTION

Detecting Individual Sites Subject to Episodic Diversifying Selection

(2012) Ben Murrell et al.   PLoS Genetics

Toll-like receptors in bony fish: From genomics to function

(2011) Yniv Palti   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome sequence of Atlantic cod reveals a unique immune system

(2011) Bastiaan Star et al.   NATURE

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

A CO2 decrease-driven cooling and increased latitudinal temperature gradient during the mid-Cretaceous Oceanic Anoxic Event 2

(2010) Jaap S. Sinninghe Damsté et al.   EARTH AND PLANETARY SCIENCE LETTERS

Diversity of Mesozoic semionotiform fishes and the origin of gars (Lepisosteidae)

(2010) Lionel Cavin   NATURWISSENSCHAFTEN

The Shifting Balance of Diversity Among Major Marine Animal Groups

(2010) J. Alroy   SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates

(2009) K. S. Kassahn et al.   GENOME RESEARCH

Mesozoic marine tetrapod diversity: mass extinctions and temporal heterogeneity in geological megabiases affecting vertebrates

(2009) R. B. J. Benson et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Global Cooling During the Eocene-Oligocene Climate Transition

(2009) Z. Liu et al.   SCIENCE

Toll-like receptor signaling in bony fish

(2009) Alexander Rebl et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY