Transcriptomic, proteomic, and metabolomic landscape of positional memory in the caudal fin of zebrafish

Mechanism of Action of Secreted Newt Anterior Gradient Protein

(2016) Kathrin S. Grassme et al.   PLoS One

Globally Optimized Targeted Mass Spectrometry: Reliable Metabolomics Analysis with Broad Coverage

(2015) Haiwei Gu et al.   ANALYTICAL CHEMISTRY

Osteoblast de- and redifferentiation are controlled by a dynamic response to retinoic acid during zebrafish fin regeneration

(2015) N. Blum et al.   DEVELOPMENT

Retinoic acid signaling spatially restricts osteoblasts and controls ray-interray organization during zebrafish fin regeneration

(2015) N. Blum et al.   DEVELOPMENT

The metabolome regulates the epigenetic landscape during naive-to-primed human embryonic stem cell transition

(2015) Henrik Sperber et al.   NATURE CELL BIOLOGY

Mechanisms of retinoic acid signalling and its roles in organ and limb development

(2015) Thomas J. Cunningham et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Signaling networks organizing regenerative growth of the zebrafish fin

(2015) Daniel Wehner et al.   TRENDS IN GENETICS

Effects of Folate and Vitamin B12 Deficiencies During Pregnancy on Fetal, Infant, and Child Development

(2015) Anne M. Molloy et al.   FOOD AND NUTRITION BULLETIN

On a Model of Pattern Regeneration Based on Cell Memory

(2015) Nikolai Bessonov et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Macrophages modulate adult zebrafish tail fin regeneration

(2014) T. A. Petrie et al.   DEVELOPMENT

Keeping at Arm’s Length during Regeneration

(2014) Valerie A. Tornini et al.   DEVELOPMENTAL CELL

Cardiac responses to hypercapnia in larval zebrafish (Danio rerio): the links between CO2 chemoreception, catecholamines and carbonic anhydrase

(2014) S. Miller et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Endogenous bioelectrical networks store non-genetic patterning information during development and regeneration

(2014) Michael Levin   JOURNAL OF PHYSIOLOGY-LONDON

Hapln1a Is Required for Connexin43-Dependent Growth and Patterning in the Regenerating Fin Skeleton

(2014) Jayalakshmi Govindan et al.   PLoS One

L-Arginine Stimulates Fibroblast Proliferation through the GPRC6A-ERK1/2 and PI3K/Akt Pathway

(2014) Takashi Fujiwara et al.   PLoS One

The dlx5a/dlx6a Genes Play Essential Roles in the Early Development of Zebrafish Median Fin and Pectoral Structures

(2014) Églantine Heude et al.   PLoS One

Wnt/β-Catenin Signaling Defines Organizing Centers that Orchestrate Growth and Differentiation of the Regenerating Zebrafish Caudal Fin

(2014) Daniel Wehner et al.   Cell Reports

Bioelectric Signaling Regulates Size in Zebrafish Fins

(2014) Simon Perathoner et al.   PLoS Genetics

Transcriptional components of anteroposterior positional information during zebrafish fin regeneration

(2013) G. Nachtrab et al.   DEVELOPMENT

The zebrafish as a model for complex tissue regeneration

(2013) Matthew Gemberling et al.   TRENDS IN GENETICS

Retinoic acid biosynthesis catalyzed by retinal dehydrogenases relies on a rate-limiting conformational transition associated with substrate recognition

(2012) Raphaël Bchini et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Morphogen-based simulation model of ray growth and joint patterning during fin development and regeneration

(2012) A.-G. Rolland-Lagan et al.   DEVELOPMENT

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Retinoic acid signaling controls the formation, proliferation and survival of the blastema during adult zebrafish fin regeneration

(2011) N. Blum et al.   DEVELOPMENT

Looking proximally and distally: 100 years of limb regeneration and beyond

(2011) David L. Stocum et al.   DEVELOPMENTAL DYNAMICS

The Meis homeoprotein regulates the axolotl Prod 1 promoter during limb regeneration

(2011) Nooreen Shaikh et al.   GENE

Regulation of Frizzled-Dependent Planar Polarity Signaling by a V-ATPase Subunit

(2010) Tobias Hermle et al.   CURRENT BIOLOGY

Zebrafish limb development is triggered by a retinoic acid signal during gastrulation

(2010) Heiner Grandel et al.   DEVELOPMENTAL DYNAMICS

Induction of Vertebrate Regeneration by a Transient Sodium Current

(2010) A.-S. Tseng et al.   JOURNAL OF NEUROSCIENCE

Loss of fish actinotrichia proteins and the fin-to-limb transition

(2010) Jing Zhang et al.   NATURE

Advances in understanding tissue regenerative capacity and mechanisms in animals

(2010) Kenneth D. Poss   NATURE REVIEWS GENETICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Glutamine, arginine, and leucine signaling in the intestine

(2009) J. Marc Rhoads et al.   AMINO ACIDS

l-Arginine stimulates proliferation and prevents endotoxin-induced death of intestinal cells

(2009) Bie Tan et al.   AMINO ACIDS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Correlations between RNA and protein expression profiles in 23 human cell lines

(2009) Marcus Gry et al.   BMC GENOMICS

Long-range neural and gap junction protein-mediated cues control polarity during planarian regeneration

(2009) Néstor J. Oviedo et al.   DEVELOPMENTAL BIOLOGY

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Molecular Signaling Networks That Choreograph Epimorphic Fin Regeneration in Zebrafish – A Mini-Review

(2009) Tamara L. Tal et al.   GERONTOLOGY

Global signatures of protein and mRNA expression levels

(2009) Raquel de Sousa Abreu et al.   Molecular BioSystems

Solution Structure and Phylogenetics of Prod1, a Member of the Three-Finger Protein Superfamily Implicated in Salamander Limb Regeneration

(2009) Acely Garza-Garcia et al.   PLoS One

FDH: An aldehyde dehydrogenase fusion enzyme in folate metabolism

(2008) Sergey A. Krupenko   CHEMICO-BIOLOGICAL INTERACTIONS

New regulators of vertebrate appendage regeneration

(2008) Viravuth P Yin et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Fgfs control homeostatic regeneration in adult zebrafish fins

(2008) A. A. Wills et al.   DEVELOPMENT

Gene expression and functional analysis of zebrafish larval fin fold regeneration

(2008) Nozomi Yoshinari et al.   DEVELOPMENTAL BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY