Reconstruction and evolutionary history of eutherian chromosomes

Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles

(2016) Marta Farré et al.   Genome Biology and Evolution

Upgrading short-read animal genome assemblies to chromosome level using comparative genomics and a universal probe set

(2016) Joana Damas et al.   GENOME RESEARCH

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

(2016) Nicholas H. Putnam et al.   GENOME RESEARCH

De novo assembly and phasing of a Korean human genome

(2016) Jeong-Sun Seo et al.   NATURE

A hybrid approach for de novo human genome sequence assembly and phasing

(2016) Yulia Mostovoy et al.   NATURE METHODS

The 3D Organization of Chromatin Explains Evolutionary Fragile Genomic Regions

(2015) Camille Berthelot et al.   Cell Reports

The Genome 10K Project: A Way Forward

(2015) Klaus-Peter Koepfli et al.   Annual Review of Animal Biosciences

Ragout--a reference-assisted assembly tool for bacterial genomes

(2014) M. Kolmogorov et al.   BIOINFORMATICS

A new rhesus macaque assembly and annotation for next-generation sequencing analyses

(2014) Aleksey V Zimin et al.   Biology Direct

Reconstructing complex regions of genomes using long-read sequencing technology

(2014) J. Huddleston et al.   GENOME RESEARCH

The impact of chromosomal rearrangements on regulation of gene expression

(2014) L. Harewood et al.   HUMAN MOLECULAR GENETICS

Reference-assisted chromosome assembly

(2013) J. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

ANGES: reconstructing ANcestral GEnomeS maps

(2012) B. R. Jones et al.   BIOINFORMATICS

Limitations of the rhesus macaque draft genome assembly and annotation

(2012) Xiongfei Zhang et al.   BMC GENOMICS

Analyses of pig genomes provide insight into porcine demography and evolution

(2012) Martien A. M. Groenen et al.   NATURE

Observation and prediction of recurrent human translocations mediated by NAHR between nonhomologous chromosomes

(2011) Z. Ou et al.   GENOME RESEARCH

Molecular cytogenetic and genomic insights into chromosomal evolution

(2011) A Ruiz-Herrera et al.   HEREDITY

Comparative and demographic analysis of orang-utan genomes

(2011) Devin P. Locke et al.   NATURE

Every genome sequence needs a good map

(2009) H. A. Lewin et al.   GENOME RESEARCH

Breakpoint graphs and ancestral genome reconstructions

(2009) M. A. Alekseyev et al.   GENOME RESEARCH

Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories

(2009) D. M. Larkin et al.   GENOME RESEARCH

Ecological adaptation determines functional mammalian olfactory subgenomes

(2009) S. Hayden et al.   GENOME RESEARCH

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

Adaptive Evolution in Zinc Finger Transcription Factors

(2009) Ryan O. Emerson et al.   PLoS Genetics

Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly

(2008) Roberta Roberto et al.   CHROMOSOME RESEARCH

Primate chromosome evolution: Ancestral karyotypes, marker order and neocentromeres

(2008) R. Stanyon et al.   CHROMOSOME RESEARCH

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event

(2008) M. K. Rudd et al.   GENOME RESEARCH