Proteome profiling in IL-1β and VEGF-activated human umbilical vein endothelial cells delineates the interlink between inflammation and angiogenesis

Leber's Hereditary Optic Neuropathy (LHON) mtDNA mutations cause cell death by overproduction of reactive oxygen species

(2015) A. Sadun et al.   ACTA OPHTHALMOLOGICA

Interleukin-6 Stimulates Defective Angiogenesis

(2015) G. Gopinathan et al.   CANCER RESEARCH

G-protein-coupled receptor kinases in inflammation and disease

(2015) N Packiriswamy et al.   GENES AND IMMUNITY

The Reactome pathway Knowledgebase

(2015) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

PathCards: multi-source consolidation of human biological pathways

(2015) Frida Belinky et al.   Database-The Journal of Biological Databases and Curation

Axl as a mediator of cellular growth and survival

(2015) Haley Axelrod et al.   Oncotarget

The Vascular Endothelium and Human Diseases

(2014) Peramaiyan Rajendran et al.   International Journal of Biological Sciences

Genome-wide Approaches Reveal Functional Vascular Endothelial Growth Factor (VEGF)-inducible Nuclear Factor of Activated T Cells (NFAT) c1 Binding to Angiogenesis-related Genes in the Endothelium

(2014) Jun-ichi Suehiro et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of novel markers of senescence and their prognostic potential in cancer

(2014) M Althubiti et al.   Cell Death & Disease

The structure of vanin 1: a key enzyme linking metabolic disease and inflammation

(2014) Ykelien L. Boersma et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data

(2013) Gabriela Bindea et al.   BIOINFORMATICS

Plant proteolytic enzyme papain abrogates angiogenic activation of human umbilical vein endothelial cells (HUVEC) in vitro

(2013) Thomas Mohr et al.   BMC Complementary and Alternative Medicine

Anti-Inflammatory Mechanisms of the Annexin A1 Protein and Its Mimetic Peptide Ac2-26 in Models of Ocular Inflammation In Vivo and In Vitro

(2013) A. P. Girol et al.   JOURNAL OF IMMUNOLOGY

Border patrol: Insights into the unique role of perlecan/heparan sulfate proteoglycan 2 at cell and tissue borders

(2013) Mary C. Farach-Carson et al.   MATRIX BIOLOGY

Proteome signatures of inflammatory activated primary human peripheral blood mononuclear cells

(2012) Verena J. Haudek-Prinz et al.   Journal of Proteomics

Network Organization of the Huntingtin Proteomic Interactome in Mammalian Brain

(2012) Dyna I. Shirasaki et al.   NEURON

SRPX2 Is a Novel Chondroitin Sulfate Proteoglycan That Is Overexpressed in Gastrointestinal Cancer

(2012) Kaoru Tanaka et al.   PLoS One

Prolyl carboxypeptidase and its inhibitors in metabolism

(2012) Jin Kwon Jeong et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Regulation of VEGF-induced endothelial cell migration by mitochondrial reactive oxygen species

(2011) Youxue Wang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

GPDE: A biological proteomic database for biomarker discovery and evaluation

(2011) Johannes Griss et al.   PROTEOMICS

A framework for oligonucleotide microarray preprocessing

(2010) Benilton S. Carvalho et al.   BIOINFORMATICS

Quantitative Proteomics Analysis of the Nuclear Fraction of Human CD4+Cells in the Early Phases of IL-4-induced Th2 Differentiation

(2010) Robert Moulder et al.   MOLECULAR & CELLULAR PROTEOMICS

The Serine Protease HtrA1 Specifically Interacts and Degrades the Tuberous Sclerosis Complex 2 Protein

(2010) M. Campioni et al.   MOLECULAR CANCER RESEARCH

Pathway Commons, a web resource for biological pathway data

(2010) E. G. Cerami et al.   NUCLEIC ACIDS RESEARCH

A Critical Role for LTA4H in Limiting Chronic Pulmonary Neutrophilic Inflammation

(2010) R. J. Snelgrove et al.   SCIENCE

Importing ArrayExpress datasets into R/Bioconductor

(2009) Audrey Kauffmann et al.   BIOINFORMATICS

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Introducing a new parameter for quality control of proteome profiles: Consideration of commonly expressed proteins

(2009) Astrid Slany et al.   ELECTROPHORESIS

Entering a New Era of Rational Biomarker Discovery for Early Detection of Melanoma Metastases: Secretome Analysis of Associated Stroma Cells

(2009) Verena Paulitschke et al.   JOURNAL OF PROTEOME RESEARCH

Cytoplasmic Proteome and Secretome Profiles of Differently Stimulated Human Dendritic Cells

(2009) Nina C. Gundacker et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic analysis of the secretome of human umbilical vein endothelial cells using a combination of free-flow electrophoresis and nanoflow LC-MS/MS

(2009) David Guillen Tunica et al.   PROTEOMICS

The production of reactive oxygen species by complex I

(2008) Judy Hirst et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The Glycosylphosphatidylinositol Anchor: A Complex Membrane-Anchoring Structure for Proteins†

(2008) Margot G. Paulick et al.   BIOCHEMISTRY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

CXCL8/IL8 Stimulates Vascular Endothelial Growth Factor (VEGF) Expression and the Autocrine Activation of VEGFR2 in Endothelial Cells by Activating NFκB through the CBM (Carma3/Bcl10/Malt1) Complex

(2008) Daniel Martin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic Profiling of Endothelial Cells in Human Lung Cancer

(2008) Hye-Jeong Park et al.   JOURNAL OF PROTEOME RESEARCH

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Origin and physiological roles of inflammation

(2008) Ruslan Medzhitov   NATURE