MDD-Palm: Identification of protein S-palmitoylation sites with substrate motifs based on maximal dependence decomposition

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines

(2016) Chien-Hsun Huang et al.   BMC Systems Biology

Site-Specific Proteomic Mapping Identifies Selectively Modified Regulatory Cysteine Residues in Functionally Distinct Protein Networks

(2015) Neal S. Gould et al.   CHEMISTRY & BIOLOGY

In Silico Identification of Protein S-Palmitoylation Sites and Their Involvement in Human Inherited Disease

(2015) Shuyan Li et al.   Journal of Chemical Information and Modeling

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins

(2015) Kai-Yao Huang et al.   NUCLEIC ACIDS RESEARCH

GSHSite: Exploiting an Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity

(2015) Yi-Ju Chen et al.   PLoS One

Characterization and identification of protein O-GlcNAcylation sites with substrate specificity

(2014) Hsin-Yi Wu et al.   BMC BIOINFORMATICS

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation

(2014) Yi-Ju Chen et al.   NUCLEIC ACIDS RESEARCH

PalmPred: An SVM Based Palmitoylation Prediction Method Using Sequence Profile Information

(2014) Bandana Kumari et al.   PLoS One

ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins

(2013) Kai-Yao Huang et al.   BMC BIOINFORMATICS

The prediction of palmitoylation site locations using a multiple feature extraction method

(2013) Shao-Ping Shi et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

dbSNO: a database of cysteine S-nitrosylation

(2012) Tzong-Yi Lee et al.   BIOINFORMATICS

Hip14l-deficient mice develop neuropathological and behavioural features of Huntington disease

(2012) Liza M. Sutton et al.   HUMAN MOLECULAR GENETICS

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

(2012) Cheng-Tsung Lu et al.   NUCLEIC ACIDS RESEARCH

Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses

(2012) Neil Arvin Bretaña et al.   PLoS One

LIBSVM

(2012) Chih-Chung Chang et al.   ACM Transactions on Intelligent Systems and Technology

Exploiting maximal dependence decomposition to identify conserved motifs from a group of aligned signal sequences

(2011) Tzong-Yi Lee et al.   BIOINFORMATICS

PlantPhos: using maximal dependence decomposition to identify plant phosphorylation sites with substrate site specificity

(2011) Tzong-Yi Lee et al.   BMC BIOINFORMATICS

Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites

(2011) Cheng-Tsung Lu et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Incorporating Distant Sequence Features and Radial Basis Function Networks to Identify Ubiquitin Conjugation Sites

(2011) Tzong-Yi Lee et al.   PLoS One

SNOSite: Exploiting Maximal Dependence Decomposition to Identify Cysteine S-Nitrosylation with Substrate Site Specificity

(2011) Tzong-Yi Lee et al.   PLoS One

Incorporating Evolutionary Information and Functional Domains for Identifying RNA Splicing Factors in Humans

(2011) Justin Bo-Kai Hsu et al.   PLoS One

Huntingtin-interacting protein 14 is a type 1 diabetes candidate protein regulating insulin secretion and  -cell apoptosis

(2011) L. A. Berchtold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prediction and analysis of protein palmitoylation sites

(2010) Le-Le Hu et al.   BIOCHIMIE

The intracellular dynamic of protein palmitoylation

(2010) Christine Salaun et al.   JOURNAL OF CELL BIOLOGY

Site-specific analysis of proteinS-acylation by resin-assisted capture

(2010) Michael T. Forrester et al.   JOURNAL OF LIPID RESEARCH

S-Alkylating Labeling Strategy for Site-Specific Identification of theS-Nitrosoproteome

(2010) Yi-Ju Chen et al.   JOURNAL OF PROTEOME RESEARCH

Mice with Alopecia, Osteoporosis, and Systemic Amyloidosis Due to Mutation in Zdhhc13, a Gene Coding for Palmitoyl Acyltransferase

(2010) Amir N. Saleem et al.   PLoS Genetics

Proteome Scale Characterization of HumanS-Acylated Proteins in Lipid Raft-enriched and Non-raft Membranes

(2009) Wei Yang et al.   MOLECULAR & CELLULAR PROTEOMICS

Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs

(2009) X.-B. Wang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

CSS-Palm 2.0: an updated software for palmitoylation sites prediction

(2008) J. Ren et al.   PROTEIN ENGINEERING DESIGN & SELECTION