The functional microbiome of arthropods

Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes

(2016) Mauro Degli Esposti et al.   Biology Direct

The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome model

(2016) Philipp Dirksen et al.   BMC BIOLOGY

Toward Accurate and Quantitative Comparative Metagenomics

(2016) Stephen Nayfach et al.   CELL

Skin microbiota is the main reservoir of Roseomonas mucosa , an emerging opportunistic pathogen so far assumed to be environmental

(2016) S. Romano-Bertrand et al.   CLINICAL MICROBIOLOGY AND INFECTION

‘Candidatus Adiutrix intracellularis’, an endosymbiont of termite gut flagellates, is the first representative of a deep-branching clade of Deltaproteobacteria and a putative homoacetogen

(2016) Wakako Ikeda-Ohtsubo et al.   ENVIRONMENTAL MICROBIOLOGY

Late Mitochondrial Acquisition, Really?

(2016) Mauro Degli Esposti   Genome Biology and Evolution

Assembly of the Caenorhabditis elegans gut microbiota from diverse soil microbial environments

(2016) Maureen Berg et al.   ISME Journal

Phylogenetics of familyEnterobacteriaceaeand proposal to reclassifyEscherichia hermanniiandSalmonella subterraneaasAtlantibacter hermanniiandAtlantibacter subterraneagen. nov., comb. nov.

(2016) Hiroyuki Hata et al.   MICROBIOLOGY AND IMMUNOLOGY

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

Characterization of the Microbial Communities in the Ant Lion Euroleon coreanus (Okamoto) (Neuroptera: Myrmeleontidae)

(2016) J N Liu et al.   NEOTROPICAL ENTOMOLOGY

A molecular palaeobiological exploration of arthropod terrestrialization

(2016) Jesus Lozano-Fernandez et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Diversity, structure and convergent evolution of the global sponge microbiome

(2016) Torsten Thomas et al.   Nature Communications

Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

(2016) Angela Glassing et al.   Gut Pathogens

The Terrestrial Isopod Microbiome: An All-in-One Toolbox for Animal–Microbe Interactions of Ecological Relevance

(2016) Didier Bouchon et al.   Frontiers in Microbiology

Reconstructing the Origin of Oxygenic Photosynthesis: Do Assembly and Photoactivation Recapitulate Evolution?

(2016) Tanai Cardona   Frontiers in Plant Science

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

Assessing Bacterial Diversity in the Rhizosphere of Thymus zygis Growing in the Sierra Nevada National Park (Spain) through Culture-Dependent and Independent Approaches

(2016) Javier Pascual et al.   PLoS One

Gut Bacterial Community of the Xylophagous Cockroaches Cryptocercus punctulatus and Parasphaeria boleiriana

(2016) Mercedes Berlanga et al.   PLoS One

Characterization of the microbiome of nipple aspirate fluid of breast cancer survivors

(2016) Alfred A. Chan et al.   Scientific Reports

The Gut Microbiota of Termites: Digesting the Diversity in the Light of Ecology and Evolution

(2015) Andreas Brune et al.   Annual Review of Microbiology

Deterministic Assembly of Complex Bacterial Communities in Guts of Germ-Free Cockroaches

(2015) Aram Mikaelyan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Host as the Driver of the Microbiota in the Gut and External Environment of Drosophila melanogaster

(2015) Adam C.-N. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota

(2015) Luis M. Bolaños et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Analysis of Structure–Function Relationships in Respiratory Complex I, an Ancient Bioenergetic Enzyme

(2015) Mauro Degli Esposti   Genome Biology and Evolution

Molecular Evolution of Cytochrome bd Oxidases across Proteobacterial Genomes

(2015) Mauro Degli Esposti et al.   Genome Biology and Evolution

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Diversity and composition of the bacterial community in Amphioxus feces

(2015) Minming Pan et al.   JOURNAL OF BASIC MICROBIOLOGY

Endosymbiotic origin and differential loss of eukaryotic genes

(2015) Chuan Ku et al.   NATURE

Putative Effect of Aquifer Recharge on the Abundance and Taxonomic Composition of Endemic Microbial Communities

(2015) Renee J. Smith et al.   PLoS One

Joint Transcriptional Control of Virulence and Resistance to Antibiotic and Environmental Stress in Acinetobacter baumannii

(2015) M. J. Gebhardt et al.   mBio

Update on infections caused by Stenotrophomonas maltophilia with particular attention to resistance mechanisms and therapeutic options

(2015) Ya-Ting Chang et al.   Frontiers in Microbiology

Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls

(2015) Eduardo Castro-Nallar et al.   PeerJ

Metagenomic analysis of the microbiota in the highly compartmented hindguts of six wood- or soil-feeding higher termites

(2015) Karen Rossmassler et al.   Microbiome

Microbiota of the indoor environment: a meta-analysis

(2015) Rachel I. Adams et al.   Microbiome

Endosymbiont Dominated Bacterial Communities in a Dwarf Spider

(2015) Bram Vanthournout et al.   PLoS One

Comparative Genomic and Phylogenetic Analyses of Gammaproteobacterial glg Genes Traced the Origin of the Escherichia coli Glycogen glgBXCAP Operon to the Last Common Ancestor of the Sister Orders Enterobacteriales and Pasteurellales

(2015) Goizeder Almagro et al.   PLoS One

Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)

(2015) Matteo Montagna et al.   PLoS One

Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense)

(2015) Tzong-Der Tzeng et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Acetic Acid Bacteria Genomes Reveal Functional Traits for Adaptation to Life in Insect Guts

(2014) Bessem Chouaia et al.   Genome Biology and Evolution

Metamicrobiomics in herbivore beetles of the genusCryptocephalus(Chrysomelidae): toward the understanding of ecological determinants in insect symbiosis

(2014) Matteo Montagna et al.   Insect Science

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Characterization of Intestinal Bacteria in Wild and Domesticated Adult Black Tiger Shrimp (Penaeus monodon)

(2014) Wanilada Rungrassamee et al.   PLoS One

Pyrotag Sequencing of the Gut Microbiota of the Cockroach Shelfordella lateralis Reveals a Highly Dynamic Core but Only Limited Effects of Diet on Community Structure

(2014) Christine Schauer et al.   PLoS One

Niches, Population Structure and Genome Reduction in Ochrobactrum intermedium: Clues to Technology-Driven Emergence of Pathogens

(2014) Fabien Aujoulat et al.   PLoS One

Evolution of Mitochondria Reconstructed from the Energy Metabolism of Living Bacteria

(2014) Mauro Degli Esposti et al.   PLoS One

The Bacterial Communities Associated with Honey Bee (Apis mellifera) Foragers

(2014) Vanessa Corby-Harris et al.   PLoS One

A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis of ticks

(2013) Ryo Nakao et al.   ISME Journal

Identification of a Hotdog Fold Thioesterase Involved in the Biosynthesis of Menaquinone in Escherichia coli

(2013) M. Chen et al.   JOURNAL OF BACTERIOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

(2013) Ami S. Bhatt et al.   NEW ENGLAND JOURNAL OF MEDICINE

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations

(2012) Jörg Simon et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

(2012) Frank O Aylward et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes

(2012) M. Muller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Pyrosequencing the Bemisia tabaci Transcriptome Reveals a Highly Diverse Bacterial Community and a Robust System for Insecticide Resistance

(2012) Wen Xie et al.   PLoS One

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genus Enhydrobacter Staley et   al. 1987 should be recognized as a member of the family Rhodospirillaceae within the class Alphaproteobacteria

(2011) Yoshiaki Kawamura et al.   MICROBIOLOGY AND IMMUNOLOGY

Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

(2011) J. Viklund et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of a Novel Gene for Biosynthesis of a Bacteroid-Specific Electron Carrier Menaquinone

(2011) Fuli Xie et al.   PLoS One

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist

(2010) Marti J. Anderson et al.   ECOLOGY LETTERS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces

(2009) F. Nagai et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Organization and expression of photosynthesis genes and operons in anoxygenic photosynthetic proteobacteria

(2008) Sylviane Liotenberg et al.   ENVIRONMENTAL MICROBIOLOGY