Using whole genome sequencing to study American foulbrood epidemiology in honeybees

An outbreak of colistin-resistant Klebsiella pneumoniae carbapenemase-producing Klebsiella pneumoniae in the Netherlands (July to December 2013), with inter-institutional spread

(2015) V. Weterings et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Whole-Genome Sequencing for Outbreak Investigations of Methicillin-Resistant Staphylococcus aureus in the Neonatal Intensive Care Unit: Time for Routine Practice?

(2015) Taj Azarian et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Multiple hospital outbreaks ofvanA Enterococcus faeciumin Denmark, 2012–13, investigated by WGS, MLST and PFGE

(2015) Mette Pinholt et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes

(2015) Werner Ruppitsch et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Rapid High Resolution Genotyping of Francisella tularensis by Whole Genome Sequence Comparison of Annotated Genes (“MLST+”)

(2015) Markus H. Antwerpen et al.   PLoS One

Biogeography ofPaenibacillus larvae, the causative agent of American foulbrood, using a new multilocus sequence typing scheme

(2014) Barbara J. Morrissey et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Whole-Genome Sequencing Revisited: Portable, Scalable, and Standardized Analysis for Typing and Detection of Virulence and Antibiotic Resistance Genes

(2014) S. R. Leopold et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-Genome-Based Mycobacterium tuberculosis Surveillance: a Standardized, Portable, and Expandable Approach

(2014) T. A. Kohl et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Microevolution during an Anthrax Outbreak Leading to Clonal Heterogeneity and Penicillin Resistance

(2014) Joakim Ågren et al.   PLoS One

How to Kill the Honey Bee Larva: Genomic Potential and Virulence Mechanisms of Paenibacillus larvae

(2014) Marvin Djukic et al.   PLoS One

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Prognostic value of using bee and hive debris samples for the detection of American foulbrood disease in honey bee colonies

(2013) Eva Forsgren et al.   APIDOLOGIE

MLST revisited: the gene-by-gene approach to bacterial genomics

(2013) Martin C. J. Maiden et al.   NATURE REVIEWS MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology

(2011) Alexander Mellmann et al.   PLoS One

American Foulbrood in honeybees and its causative agent, Paenibacillus larvae

(2009) Elke Genersch   JOURNAL OF INVERTEBRATE PATHOLOGY

Molecular epidemiology ofPaenibacillus larvaeinfection in Finland

(2008) Jaana Pentikäinen et al.   APIDOLOGIE

Paenibacillus larvae and American Foulbrood – long since known and still surprising

(2008) E. Genersch   Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety