Accurate prediction of functional effects for variants by combining gradient tree boosting with optimal neighborhood properties

Predicting Golgi-resident protein types using pseudo amino acid compositions: Approaches with positional specific physicochemical properties

(2016) Ya-Sen Jiao et al.   JOURNAL OF THEORETICAL BIOLOGY

A novel features ranking metric with application to scalable visual and bioinformatics data classification

(2016) Quan Zou et al.   NEUROCOMPUTING

Identification of Secretory Proteins inMycobacterium tuberculosisUsing Pseudo Amino Acid Composition

(2016) Huan Yang et al.   Biomed Research International

A computational interactome and functional annotation for the human proteome

(2016) José Ignacio Garzón et al.   eLife

The Contribution of Missense Mutations in Core and Rim Residues of Protein–Protein Interfaces to Human Disease

(2015) Alessia David et al.   JOURNAL OF MOLECULAR BIOLOGY

Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning

(2015) Rhys Heffernan et al.   Scientific Reports

DISOPRED3: precise disordered region predictions with annotated protein-binding activity

(2014) David T. Jones et al.   BIOINFORMATICS

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features

(2014) Christopher M. Yates et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification of bacteriophage virion proteins by the ANOVA feature selection and analysis

(2014) Hui Ding et al.   Molecular BioSystems

PredHS: a web server for predicting protein–protein interaction hot spots by using structural neighborhood properties

(2014) Lei Deng et al.   NUCLEIC ACIDS RESEARCH

Predicting Human Protein Subcellular Locations by the Ensemble of Multiple Predictors via Protein-Protein Interaction Network with Edge Clustering Coefficients

(2014) Pufeng Du et al.   PLoS One

Phenylalanine hydroxylase: Function, structure, and regulation

(2013) Marte I. Flydal et al.   IUBMB LIFE

Boosting Prediction Performance of Protein–Protein Interaction Hot Spots by Using Structural Neighborhood Properties

(2013) Lei Deng et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Subcellular localization prediction for human internal and organelle membrane proteins with projected gene ontology scores

(2012) Pufeng Du et al.   JOURNAL OF THEORETICAL BIOLOGY

SIFT web server: predicting effects of amino acid substitutions on proteins

(2012) Ngak-Leng Sim et al.   NUCLEIC ACIDS RESEARCH

FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest Model

(2012) Mingjun Wang et al.   PLoS One

Prediction of the types of ion channel-targeted conotoxins based on radial basis function network

(2012) Lu-Feng Yuan et al.   TOXICOLOGY IN VITRO

Using bioinformatics to predict the functional impact of SNVs

(2010) M. S. Cline et al.   BIOINFORMATICS

Prediction of thermophilic proteins using feature selection technique

(2010) Hao Lin et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Stability selection

(2010) Nicolai Meinshausen et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Complete Khoisan and Bantu genomes from southern Africa

(2010) Stephan C. Schuster et al.   NATURE

Signatures of mutation and selection in the cancer genome

(2010) Graham R. Bignell et al.   NATURE

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Prediction of protein-protein interaction sites using an ensemble method

(2009) Lei Deng et al.   BMC BIOINFORMATICS

The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group

(2009) S.-M. Ahn et al.   GENOME RESEARCH

A generic method for assignment of reliability scores applied to solvent accessibility predictions

(2009) Bent Petersen et al.   BMC STRUCTURAL BIOLOGY

HSEpred: predict half-sphere exposure from protein sequences

(2008) Jiangning Song et al.   BIOINFORMATICS

SNAP predicts effect of mutations on protein function

(2008) Yana Bromberg et al.   BIOINFORMATICS

The diploid genome sequence of an Asian individual

(2008) Jun Wang et al.   NATURE

Consensus scoring for enriching near-native structures from protein-protein docking decoys

(2008) Shide Liang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS