Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles

The Ensembl gene annotation system

(2016) Bronwen L. Aken et al.   Database-The Journal of Biological Databases and Curation

CARMO: a comprehensive annotation platform for functional exploration of rice multi-omics data

(2015) Jiawei Wang et al.   PLANT JOURNAL

Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice

(2015) Hinako Takehisa et al.   Rice

Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach

(2015) Sanchari Sircar et al.   Frontiers in Genetics

Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development

(2015) Yoshihiro Ohmori et al.   GENES & GENETIC SYSTEMS

Resources for systems biology in rice

(2014) Anil Kumar Nalini Chandran et al.   JOURNAL OF PLANT BIOLOGY

Genome-wide expression analysis of rice ABC transporter family across spatio-temporal samples and in response to abiotic stresses

(2014) Van Ngoc Tuyet Nguyen et al.   JOURNAL OF PLANT PHYSIOLOGY

Imprinting in rice: the role of DNA and histone methylation in modulating parent-of-origin specific expression and determining transcript start sites

(2014) Miru Du et al.   PLANT JOURNAL

OsmiR396d-Regulated OsGRFs Function in Floral Organogenesis in Rice through Binding to Their Targets OsJMJ706 and OsCR4

(2014) H. Liu et al.   PLANT PHYSIOLOGY

STEME: A Robust, Accurate Motif Finder for Large Data Sets

(2014) John E. Reid et al.   PLoS One

Comparative analysis of protein-protein interactions in the defense response of rice and wheat

(2013) Dario Cantu et al.   BMC GENOMICS

The Stay-Green Rice like (SGRL) gene regulates chlorophyll degradation in rice

(2013) Hong Rong et al.   JOURNAL OF PLANT PHYSIOLOGY

DWARF 53 acts as a repressor of strigolactone signalling in rice

(2013) Liang Jiang et al.   NATURE

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

A novel 5-enolpyruvoylshikimate-3-phosphate (EPSP) synthase transgene for glyphosate resistance stimulates growth and fecundity in weedy rice (Oryza sativa) without herbicide

(2013) Wei Wang et al.   NEW PHYTOLOGIST

MTR1 Encodes a Secretory Fasciclin Glycoprotein Required for Male Reproductive Development in Rice

(2012) Hexin Tan et al.   DEVELOPMENTAL CELL

RNA-Directed DNA Methylation Is Involved in Regulating Photoperiod-Sensitive Male Sterility in Rice

(2012) Jihua Ding et al.   Molecular Plant

OsDGL1, a Homolog of an Oligosaccharyltransferase Complex Subunit, is Involved in N-Glycosylation and Root Development in Rice

(2012) Cheng Qin et al.   PLANT AND CELL PHYSIOLOGY

RiceDECUSSATEcontrols phyllotaxy by affecting the cytokinin signaling pathway

(2012) Jun-ichi Itoh et al.   PLANT JOURNAL

The role of OsCOM1 in homologous chromosome synapsis and recombination in rice meiosis

(2012) Jianhui Ji et al.   PLANT JOURNAL

Rice LGD1 containing RNA binding activity affects growth and development through alternative promoters

(2012) Saminathan Thangasamy et al.   PLANT JOURNAL

SEMI-ROLLED LEAF1 Encodes a Putative Glycosylphosphatidylinositol-Anchored Protein and Modulates Rice Leaf Rolling by Regulating the Formation of Bulliform Cells

(2012) J.-J. Xiang et al.   PLANT PHYSIOLOGY

Overexpression of OsTLP27 in rice improves chloroplast function and photochemical efficiency

(2012) Feng Hu et al.   PLANT SCIENCE

Young Leaf Chlorosis 1, a chloroplast-localized gene required for chlorophyll and lutein accumulation during early leaf development in rice

(2012) Kunneng Zhou et al.   PLANTA

A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype

(2012) Lilan Hong et al.   PLANTA

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway

(2012) Donghai Mao et al.   PLoS One

PRIN: a predicted rice interactome network

(2011) Haibin Gu et al.   BMC BIOINFORMATICS

The SMALL AND ROUND SEED1 (SRS1/DEP2) gene is involved in the regulation of seed size in rice

(2011) Yuki Abe et al.   GENES & GENETIC SYSTEMS

LAX PANICLE2of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems

(2011) Hiroaki Tabuchi et al.   PLANT CELL

SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice

(2011) H. Nakagawa et al.   PLANT PHYSIOLOGY

AtPIN: Arabidopsis thaliana Protein Interaction Network

(2010) Marcelo M Brandão et al.   BMC BIOINFORMATICS

Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation

(2010) Feng Li et al.   CELL RESEARCH

Overexpression of ACL1 (abaxially curled leaf 1) Increased Bulliform Cells and Induced Abaxial Curling of Leaf Blades in Rice

(2010) Ling Li et al.   Molecular Plant

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

(2010) Y. Sato et al.   NUCLEIC ACIDS RESEARCH

SSD1, which encodes a plant-specific novel protein, controls plant elongation by regulating cell division in rice

(2010) Kenji ASANO et al.   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes

(2010) Y. Mizuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice

(2010) K. Sugimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A dominant mutation of TWISTED DWARF 1 encoding an α-tubulin protein causes severe dwarfism and right helical growth in rice

(2009) Hidehiko Sunohara et al.   GENES & GENETIC SYSTEMS

Cytoplasmic Male Sterility-Related Protein Kinase, OsNek3, is Regulated Downstream of Mitochondrial Protein Phosphatase 2C, DCW11

(2009) Sota Fujii et al.   PLANT AND CELL PHYSIOLOGY

Circadian clock- and phytochrome-regulated Dof-like gene,Rdd1, is associated with grain size in rice

(2009) MASAO IWAMOTO et al.   PLANT CELL AND ENVIRONMENT

Mutation of the rice genePAIR3results in lack of bivalent formation in meiosis

(2009) Wenya Yuan et al.   PLANT JOURNAL

Functional characterization of rice OsDof12

(2009) Dejun Li et al.   PLANTA

Suppressed expression of RETROGRADE-REGULATED MALE STERILITY restores pollen fertility in cytoplasmic male sterile rice plants

(2009) S. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice

(2008) Setsuko Komatsu et al.   AMINO ACIDS

Genevestigator Transcriptome Meta-Analysis and Biomarker Search using Rice and Barley Gene Expression Databases

(2008) Philip Zimmermann et al.   Molecular Plant

Characteristic and Expression Analysis of a Metallothionein Gene, OsMT2b, Down-Regulated by Cytokinin Suggests Functions in Root Development and Seed Embryo Germination of Rice

(2008) J. Yuan et al.   PLANT PHYSIOLOGY

Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes

(2008) Y. Long et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Functional Analysis of Light-Responsive Unique Genes and Gene Family Members in Rice

(2008) Ki-Hong Jung et al.   PLoS Genetics

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

(2008) Vu T Chu et al.   GENOME BIOLOGY