Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens : introducing the ecotype Reute

A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants

(2016) Carlos Ortiz-Ramírez et al.   Molecular Plant

The decision to germinate is regulated by divergent molecular networks in spores and seeds

(2016) Eleanor F. Vesty et al.   NEW PHYTOLOGIST

Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 inOryza sativa

(2016) Shengping Li et al.   PLANT CELL

PpASCL, the Physcomitrella patens Anther-Specific Chalcone Synthase-Like Enzyme Implicated in Sporopollenin Biosynthesis, Is Needed for Integrity of the Moss Spore Wall and Spore Viability

(2016) Rhys M. Daku et al.   PLoS One

A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction

(2016) Nelly A. Horst et al.   Nature Plants

DNA based revised geographic circumscription of species ofPhyscomitrellas.l. (Funariaceae):P. patensnew to East Asia andP. magdalenaenew to East Africa

(2015) Rafael Medina et al.   BRYOLOGIST

DNA METHYLTRANSFERASE 1 is involved in mCG and mCCG DNA methylation and is essential for sporophyte development in Physcomitrella patens

(2015) Rafael Yaari et al.   PLANT MOLECULAR BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex

(2014) Anna K Beike et al.   BMC EVOLUTIONARY BIOLOGY

Efficient Purging of Deleterious Mutations in Plants with Haploid Selfing

(2014) Péter Szövényi et al.   Genome Biology and Evolution

Insights from the cold transcriptome ofPhyscomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation

(2014) Anna K. Beike et al.   NEW PHYTOLOGIST

RAD51B plays an essential role during somatic and meiotic recombination in Physcomitrella

(2014) Florence Charlot et al.   NUCLEIC ACIDS RESEARCH

The chromatin landscape of the mossPhyscomitrella patensand its dynamics during development and drought stress

(2014) Thomas Widiez et al.   PLANT JOURNAL

Large-scale gene expression profiling data for the model mossPhyscomitrella patensaid understanding of developmental progression, culture and stress conditions

(2014) Manuel Hiss et al.   PLANT JOURNAL

Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells

(2014) Shanrong Zhao et al.   PLoS One

Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

(2013) Andreas D Zimmer et al.   BMC GENOMICS

Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens

(2013) Martin-Timothy O’Donoghue et al.   JOURNAL OF EXPERIMENTAL BOTANY

An Evolutionarily Conserved Signaling Mechanism Mediates Far-Red Light Responses in Land Plants

(2013) Anja Possart et al.   PLANT CELL

A parsimonious model of lineage-specific expansion of MADS-box genes in Physcomitrella patens

(2013) E. I. Barker et al.   PLANT CELL REPORTS

The Moss Physcomitrella patens Reproductive Organ Development Is Highly Organized, Affected by the Two SHI/STY Genes and by the Level of Active Auxin in the SHI/STY Expression Domain

(2013) K. Landberg et al.   PLANT PHYSIOLOGY

Network Theory Inspired Analysis of Time-Resolved Expression Data Reveals Key Players Guiding P. patens Stem Cell Development

(2013) Hauke Busch et al.   PLoS One

KNOX2 Genes Regulate the Haploid-to-Diploid Morphological Transition in Land Plants

(2013) K. Sakakibara et al.   SCIENCE

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

(2012) Lihong Xiao et al.   PLoS One

Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens

(2011) Lihong Xiao et al.   BMC PLANT BIOLOGY

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

PpASCL, a moss ortholog of anther-specific chalcone synthase-like enzymes, is a hydroxyalkylpyrone synthase involved in an evolutionarily conserved sporopollenin biosynthesis pathway

(2011) Che C. Colpitts et al.   NEW PHYTOLOGIST

Seventy Million Years of Concerted Evolution of a Homoeologous Chromosome Pair, in Parallel, in Major Poaceae Lineages

(2011) Xiyin Wang et al.   PLANT CELL

A functionally required unfoldome from the plant kingdom: intrinsically disordered N-terminal domains of GRAS proteins are involved in molecular recognition during plant development

(2011) Xiaolin Sun et al.   PLANT MOLECULAR BIOLOGY

Gene Conversion in Angiosperm Genomes with an Emphasis on Genes Duplicated by Polyploidization

(2011) Xi-Yin Wang et al.   Genes

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Evolutionary crossroads in developmental biology: Physcomitrella patens

(2010) M. J. Prigge et al.   DEVELOPMENT

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Molecular and Physiological Responses of Physcomitrella patens to Ultraviolet-B Radiation

(2010) L. Wolf et al.   PLANT PHYSIOLOGY

Role of ABA and ABI3 in Desiccation Tolerance

(2010) A. Khandelwal et al.   SCIENCE

A hitchhiker's guide to the MADS world of plants

(2010) Lydia Gramzow et al.   GENOME BIOLOGY

KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

(2010) Dapeng Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Regulation of stem cell maintenance by the Polycomb protein FIE has been conserved during land plant evolution

(2009) A. Mosquna et al.   DEVELOPMENT

THE SPECIATION HISTORY OF THEPHYSCOMITRIUM-PHYSCOMITRELLASPECIES COMPLEX

(2009) Stuart F. McDaniel et al.   EVOLUTION

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens

(2009) P. K. Harshavardhan Koduri et al.   PLANT MOLECULAR BIOLOGY

A polycomb repressive complex 2 gene regulates apogamy and gives evolutionary insights into early land plant evolution

(2009) Y. Okano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Class 1 KNOX genes are not involved in shoot development in the mossPhyscomitrella patensbut do function in sporophyte development

(2008) Keiko Sakakibara et al.   EVOLUTION & DEVELOPMENT

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

A sequence-anchored genetic linkage map for the moss,Physcomitrella patens

(2008) Yasuko Kamisugi et al.   PLANT JOURNAL

Exploring plant biodiversity: the Physcomitrella genome and beyond

(2008) Daniel Lang et al.   TRENDS IN PLANT SCIENCE