Global profiling of alternative splicing landscape responsive to drought, heat and their combination in wheat (Triticum aestivum L.)

The heat-shock protein/chaperone network and multiple stress resistance

(2017) Pierre Jacob et al.   PLANT BIOTECHNOLOGY JOURNAL

Integrating Omics and Alternative Splicing Reveals Insights into Grape Response to High Temperature

(2017) Jianfu Jiang et al.   PLANT PHYSIOLOGY

Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing

(2016) Tassa Saldi et al.   JOURNAL OF MOLECULAR BIOLOGY

DNA Methylation Affects Gene Alternative Splicing in Plants: An Example from Rice

(2016) Xutong Wang et al.   Molecular Plant

Physiological and pathophysiological role of nonsense-mediated mRNA decay

(2016) Franziska Ottens et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

WD40-REPEAT 5afunctions in drought stress tolerance by regulating nitric oxide accumulation in Arabidopsis

(2016) Wen-Cheng Liu et al.   PLANT CELL AND ENVIRONMENT

Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure

(2015) Shiran Naftelberg et al.   Annual Review of Biochemistry

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

(2015) Zhenshan Liu et al.   BMC PLANT BIOLOGY

An alternatively spliced heat shock transcription factor,OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice

(2015) Q. Cheng et al.   PLANT BIOLOGY

Insect herbivory elicits genome-wide alternative splicing responses inNicotiana attenuata

(2015) Zhihao Ling et al.   PLANT JOURNAL

The Alfin-like homeodomain finger protein AL5 suppresses multiple negative factors to confer abiotic stress tolerance in Arabidopsis

(2015) Wei Wei et al.   PLANT JOURNAL

Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize

(2015) Shawn R. Thatcher et al.   PLANT PHYSIOLOGY

Defective histone supply causes changes in RNA polymerase II elongation rate and cotranscriptional pre-mRNA splicing

(2015) Silvia Jimeno-González et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing

(2015) Kazumi Nakabayashi et al.   PLoS Genetics

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

(2014) Feng Ding et al.   BMC GENOMICS

Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress

(2014) Stephanie M Johnson et al.   BMC GENOMICS

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

(2014) Nicola Vitulo et al.   BMC PLANT BIOLOGY

Single-Nucleotide Resolution Mapping of the Gossypium raimondii Transcriptome Reveals a New Mechanism for Alternative Splicing of Introns

(2014) Qin Li et al.   Molecular Plant

Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation

(2014) S. R. Thatcher et al.   PLANT CELL

Global Dissection of Alternative Splicing in Paleopolyploid Soybean

(2014) Yanting Shen et al.   PLANT CELL

Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens

(2014) C.-Y. Chang et al.   PLANT PHYSIOLOGY

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Temperature-dependent regulation of flowering by antagonistic FLM variants

(2013) David Posé et al.   NATURE

Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses

(2013) D. Staiger et al.   PLANT CELL

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

Genome-Wide Detection of Condition-Sensitive Alternative Splicing in Arabidopsis Roots

(2013) W. Li et al.   PLANT PHYSIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a

(2012) Alyssa A. Gulledge et al.   AMERICAN JOURNAL OF BOTANY

Effects of drought and high temperature stress on synthetic hexaploid wheat

(2012) Gautam P. Pradhan et al.   FUNCTIONAL PLANT BIOLOGY

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation

(2012) Verena Kriechbaumer et al.   PLANT JOURNAL

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

Independent and Combined Effects of High Temperature and Drought Stress During Grain Filling on Plant Yield and Chloroplast EF-Tu Expression in Spring Wheat

(2011) P. V. V. Prasad et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Ganglion-specific splicing of TRPV1 underlies infrared sensation in vampire bats

(2011) Elena O. Gracheva et al.   NATURE

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

(2011) Maria Kalyna et al.   NUCLEIC ACIDS RESEARCH

A Plant Small Polypeptide Is a Novel Component of DNA-Binding Protein Phosphatase 1-Mediated Resistance to Plum pox virus in Arabidopsis

(2011) M. J. Castello et al.   PLANT PHYSIOLOGY

TNO1 Is Involved in Salt Tolerance and Vacuolar Trafficking in Arabidopsis

(2011) S.-J. Kim et al.   PLANT PHYSIOLOGY

Competitive inhibition of transcription factors by small interfering peptides

(2011) Pil Joon Seo et al.   TRENDS IN PLANT SCIENCE

Plant serine/arginine-rich proteins: roles in precursor messenger RNA splicing, plant development, and stress responses

(2011) Anireddy S. N. Reddy et al.   Wiley Interdisciplinary Reviews-RNA

Conservation of an RNA regulatory map between Drosophila and mammals

(2010) A. N. Brooks et al.   GENOME RESEARCH

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

(2010) G. Zhang et al.   GENOME RESEARCH

Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes

(2010) Satoko Matsukura et al.   MOLECULAR GENETICS AND GENOMICS

Histological and microarray analysis of the direct effect of water shortage alone or combined with heat on early grain development in wheat (Triticum aestivum)

(2010) Attila Szűcs et al.   PHYSIOLOGIA PLANTARUM

Allopolyploidization reduces alternative splicing efficiency for transcripts of the wheat DREB2 homolog, WDREB2

(2009) Akihiro Terashima et al.   GENOME

The Cytosolic Protein Response as a Subcomponent of the Wider Heat Shock Response in Arabidopsis

(2009) A. Sugio et al.   PLANT CELL

Over-expression of OsDREB genes lead to enhanced drought tolerance in rice

(2008) Jian-Qiang Chen et al.   BIOTECHNOLOGY LETTERS