Structural and Vibrational Characterization of the Chromophore Binding Site of Bacterial Phytochrome Agp1

The Crystal Structures of the N-terminal Photosensory Core Module ofAgrobacteriumPhytochrome Agp1 as Parallel and Anti-parallel Dimers

(2016) Soshichiro Nagano et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure of the Full-Length Bacteriophytochrome from the Plant Pathogen Xanthomonas campestris Provides Clues to its Long-Range Signaling Mechanism

(2016) Lisandro Horacio Otero et al.   JOURNAL OF MOLECULAR BIOLOGY

The role of local and remote amino acid substitutions for optimizing fluorescence in bacteriophytochromes: A case study on iRFP

(2016) David Buhrke et al.   Scientific Reports

A protonation-coupled feedback mechanism controls the signalling process in bathy phytochromes

(2015) Francisco Velazquez Escobar et al.   Nature Chemistry

FTIR Spectroscopy Revealing Light-Dependent Refolding of the Conserved Tongue Region of Bacteriophytochrome

(2014) Emina A. Stojković et al.   Journal of Physical Chemistry Letters

Phytochromes: An Atomic Perspective on Photoactivation and Signaling

(2014) E. Sethe Burgie et al.   PLANT CELL

Phytochrome Cytoplasmic Signaling

(2013) Jon Hughes   Annual Review of Plant Biology

Structural Parameters Controlling the Fluorescence Properties of Phytochromes

(2013) Francisco Velazquez Escobar et al.   BIOCHEMISTRY

Structure of the Biliverdin Cofactor in the Pfr State of Bathy and Prototypical Phytochromes

(2013) Johannes Salewski et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

(2011) Florent Lassalle et al.   Genome Biology and Evolution

Elucidating photoinduced structural changes in phytochromes by the combined application of resonance Raman spectroscopy and theoretical methods

(2011) M.A. Mroginski et al.   JOURNAL OF MOLECULAR STRUCTURE

Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome

(2011) C. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Raman Spectra of the Phycoviolobilin Cofactor in Phycoerythrocyanin Calculated by QM/MM Methods

(2010) Maria A. Mroginski et al.   CHEMPHYSCHEM

NMR Spectroscopic Investigation of Mobility and Hydrogen Bonding of the Chromophore in the Binding Pocket of Phytochrome Proteins

(2010) Marco Röben et al.   CHEMPHYSCHEM

Light-Induced Activation of Bacterial Phytochrome Agp1 Monitored by Static and Time-Resolved FTIR Spectroscopy

(2010) Patrick Piwowarski et al.   CHEMPHYSCHEM

Primary Reactions of Bacteriophytochrome Observed with Ultrafast Mid-Infrared Spectroscopy

(2010) K. C. Toh et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Structure of the Chromophore Binding Pocket in the Pr State of Plant Phytochrome phyA

(2010) Maria Andrea Mroginski et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Chromophore Structure of Cyanobacterial Phytochrome Cph1 in the Pr State: Reconciling Structural and Spectroscopic Data by QM/MM Calculations

(2009) Maria Andrea Mroginski et al.   BIOPHYSICAL JOURNAL

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

DL-FIND: An Open-Source Geometry Optimizer for Atomistic Simulations†

(2009) Johannes Kästner et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Molecular Dynamics Simulations of the Chromophore Binding Site ofDeinococcus radioduransBacteriophytochrome Using New Force Field Parameters for the Phytochromobilin Chromophore

(2009) Steve Kaminski et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Chromophore Heterogeneity and Photoconversion in Phytochrome Crystals and Solution Studied by Resonance Raman Spectroscopy

(2008) David von Stetten et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Mutational Analysis ofDeinococcus radioduransBacteriophytochrome Reveals Key Amino Acids Necessary for the Photochromicity and Proton Exchange Cycle of Phytochromes

(2008) Jeremiah R. Wagner et al.   JOURNAL OF BIOLOGICAL CHEMISTRY