Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data

A new hypothesis of dinosaur relationships and early dinosaur evolution

(2017) Matthew G. Baron et al.   NATURE

Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et   al .

(2017) Joseph W. Brown et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data

(2017) Mark N. Puttick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data

(2016) Joseph E. O'Reilly et al.   Biology Letters

Effects of missing data on topological inference using a Total Evidence approach

(2016) Thomas Guillerme et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data

(2014) April M. Wright et al.   PLoS One

Looking for trees in the forest: summary tree from posterior samples

(2013) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

The oldest dinosaur? A Middle Triassic dinosauriform from Tanzania

(2012) S. J. Nesbitt et al.   Biology Letters

A Silurian armoured aplacophoran and implications for molluscan phylogeny

(2012) Mark D. Sutton et al.   NATURE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics

(2008) Mark T. Holder et al.   SYSTEMATIC BIOLOGY