ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
出版年份 2017 全文链接
标题
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume 45, Issue 19, Pages 11004-11018
出版商
Oxford University Press (OUP)
发表日期
2017-08-17
DOI
10.1093/nar/gkx756
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments
- (2016) Phuong Dao et al. Cell Systems
- Transcription factor trapping by RNA in gene regulatory elements
- (2015) A. A. Sigova et al. SCIENCE
- Leveraging cross-link modification events in CLIP-seq for motif discovery
- (2014) Emad Bahrami-Samani et al. NUCLEIC ACIDS RESEARCH
- DoRiNA 2.0—upgrading the doRiNA database of RNA interactions in post-transcriptional regulation
- (2014) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Microprocessor Activity Controls Differential miRNA Biogenesis In Vivo
- (2014) Thomas Conrad et al. Cell Reports
- Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs
- (2014) Matthew B Friedersdorf et al. GENOME BIOLOGY
- GraphProt: modeling binding preferences of RNA-binding proteins
- (2014) Daniel Maticzka et al. GENOME BIOLOGY
- CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data
- (2014) Tsukasa Fukunaga et al. GENOME BIOLOGY
- Beyond Secondary Structure: Primary-Sequence Determinants License Pri-miRNA Hairpins for Processing
- (2013) Vincent C. Auyeung et al. CELL
- The Core Microprocessor Component DiGeorge Syndrome Critical Region 8 (DGCR8) Is a Nonspecific RNA-binding Protein
- (2013) Braden M. Roth et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Site identification in high-throughput RNA–protein interaction data
- (2012) Philip J. Uren et al. BIOINFORMATICS
- Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
- (2012) Alfredo Castello et al. CELL
- DGCR8 HITS-CLIP reveals novel functions for the Microprocessor
- (2012) Sara Macias et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- YY1 Tethers Xist RNA to the Inactive X Nucleation Center
- (2011) Yesu Jeon et al. CELL
- PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data
- (2011) David L Corcoran et al. GENOME BIOLOGY
- RNAstructure: software for RNA secondary structure prediction and analysis
- (2010) Jessica S Reuter et al. BMC BIOINFORMATICS
- Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
- (2010) Markus Hafner et al. CELL
- iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
- (2010) Julian König et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- RNAcontext: A New Method for Learning the Sequence and Structure Binding Preferences of RNA-Binding Proteins
- (2010) Hilal Kazan et al. PLoS Computational Biology
- Evidence-ranked motif identification
- (2010) Stoyan Georgiev et al. GENOME BIOLOGY
- Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
- (2009) Debashish Ray et al. NATURE BIOTECHNOLOGY
- RNA-binding proteins and post-transcriptional gene regulation
- (2008) Tina Glisovic et al. FEBS LETTERS
- RSAT: regulatory sequence analysis tools
- (2008) M. Thomas-Chollier et al. NUCLEIC ACIDS RESEARCH
- New implications for the QUAKING RNA binding protein in human disease
- (2007) Carol Anne Chénard et al. JOURNAL OF NEUROSCIENCE RESEARCH
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