mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines

An integrated expression atlas of miRNAs and their promoters in human and mouse

(2017) Derek de Rie et al.   NATURE BIOTECHNOLOGY

MicroRNA therapeutics: towards a new era for the management of cancer and other diseases

(2017) Rajesha Rupaimoole et al.   NATURE REVIEWS DRUG DISCOVERY

Identification of active miRNA promoters from nuclear run-on RNA sequencing

(2017) Qi Liu et al.   NUCLEIC ACIDS RESEARCH

Identifying cell-specific microRNA transcriptional start sites

(2016) Xu Hua et al.   BIOINFORMATICS

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data

(2016) Ke-Ren Zhou et al.   NUCLEIC ACIDS RESEARCH

Identification of potential biomarkers to differentially diagnose solid pseudopapillary tumors and pancreatic malignancies via a gene regulatory network

(2015) Pengping Li et al.   Journal of Translational Medicine

Determining the role of microRNAs in psychiatric disorders

(2015) Orna Issler et al.   NATURE REVIEWS NEUROSCIENCE

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators

(2015) Georgios Georgakilas et al.   NUCLEIC ACIDS RESEARCH

The NF-κB p65/miR-23a-27a-24 cluster is a target for leukemia treatment

(2015) Yong-Chang Zhang et al.   Oncotarget

MicroRNAs in kidney physiology and disease

(2014) Piera Trionfini et al.   Nature Reviews Nephrology

microTSS: accurate microRNA transcription start site identification reveals a significant number of divergent pri-miRNAs

(2014) Georgios Georgakilas et al.   Nature Communications

Regulation of Cardiac Cell Fate by microRNAs: Implications for Heart Regeneration

(2014) Margarida Gama-Carvalho et al.   Cells

The ENCODE project: implications for psychiatric genetics

(2013) D H Kavanagh et al.   MOLECULAR PSYCHIATRY

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

The accessible chromatin landscape of the human genome

(2012) Robert E. Thurman et al.   NATURE

MicroRNA therapeutics for cardiovascular disease: opportunities and obstacles

(2012) Eva van Rooij et al.   NATURE REVIEWS DRUG DISCOVERY

Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs

(2012) Julien Roux et al.   NUCLEIC ACIDS RESEARCH

A novel source for miR-21 expression through the alternative polyadenylation of VMP1 gene transcripts

(2012) Judit Ribas et al.   NUCLEIC ACIDS RESEARCH

miRT: A Database of Validated Transcription Start Sites of Human MicroRNAs

(2012) Malay Bhattacharyya et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Non-coding RNAs in human disease

(2011) Manel Esteller   NATURE REVIEWS GENETICS

CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse

(2010) Olivier Friard et al.   BMC BIOINFORMATICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Mechanisms of deadenylation-dependent decay

(2010) Chyi-Ying A. Chen et al.   Wiley Interdisciplinary Reviews-RNA

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

TransmiR: a transcription factor–microRNA regulation database

(2009) Juan Wang et al.   NUCLEIC ACIDS RESEARCH

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY