Using high-throughput barcode sequencing to efficiently map connectomes

Pooled-matrix protein interaction screens using Barcode Fusion Genetics

(2016) N. Yachie et al.   Molecular Systems Biology

Rapidly evolving homing CRISPR barcodes

(2016) Reza Kalhor et al.   NATURE METHODS

High-Throughput Mapping of Single-Neuron Projections by Sequencing of Barcoded RNA

(2016) Justus M. Kebschull et al.   NEURON

Whole-organism lineage tracing by combinatorial and cumulative genome editing

(2016) Aaron McKenna et al.   SCIENCE

iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast

(2016) Mia Jaffe et al.   G3-Genes Genomes Genetics

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

High-resolution, high-throughput imaging with a multibeam scanning electron microscope

(2015) A.L. EBERLE et al.   JOURNAL OF MICROSCOPY

Large-scale automatic reconstruction of neuronal processes from electron microscopy images

(2015) Verena Kaynig et al.   MEDICAL IMAGE ANALYSIS

Principles of connectivity among morphologically defined cell types in adult neocortex

(2015) X. Jiang et al.   SCIENCE

Probing homodimer formation of epidermal growth factor receptor by selective crosslinking

(2014) Xiaoli Sun et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Technology: The $1,000 genome

(2014) Erika Check Hayden   NATURE

Illumina claims $1,000 genome win

(2014) Cormac Sheridan   NATURE BIOTECHNOLOGY

In vivo generation of DNA sequence diversity for cellular barcoding

(2014) Ian D. Peikon et al.   NUCLEIC ACIDS RESEARCH

Highly Multiplexed Subcellular RNA Sequencing in Situ

(2014) J. H. Lee et al.   SCIENCE

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire

(2013) Brandon J DeKosky et al.   NATURE BIOTECHNOLOGY

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

(2013) Moritz Helmstaedter   NATURE METHODS

The organization of two new cortical interneuronal circuits

(2013) Xiaolong Jiang et al.   NATURE NEUROSCIENCE

Automated whole-cell patch-clamp electrophysiology of neurons in vivo

(2012) Suhasa B Kodandaramaiah et al.   NATURE METHODS

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

Sequencing the Connectome

(2012) Anthony M. Zador et al.   PLOS BIOLOGY

Large-Scale Automated Histology in the Pursuit of Connectomes

(2011) D. Kleinfeld et al.   JOURNAL OF NEUROSCIENCE

Imaging Protein–Protein Interactions inside Living Cells via Interaction-Dependent Fluorophore Ligation

(2011) Sarah A. Slavoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

(2011) Reza Kalhor et al.   NATURE BIOTECHNOLOGY

mGRASP enables mapping mammalian synaptic connectivity with light microscopy

(2011) Jinhyun Kim et al.   NATURE METHODS

Microfluidic Local Perfusion Chambers for the Visualization and Manipulation of Synapses

(2010) Anne M. Taylor et al.   NEURON

On Optical Detection of Densely Labeled Synapses in Neuropil and Mapping Connectivity with Combinatorially Multiplexed Fluorescent Synaptic Markers

(2010) Yuriy Mishchenko   PLoS One

Microdroplet-based PCR enrichment for large-scale targeted sequencing

(2009) Ryan Tewhey et al.   NATURE BIOTECHNOLOGY

The synaptic proteins neurexins and neuroligins are widely expressed in the vascular system and contribute to its functions

(2009) A. Bottos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Engineered Protein Tag for Multiprotein Labeling in Living Cells

(2008) Arnaud Gautier et al.   CHEMISTRY & BIOLOGY

Polarized Targeting of Neurexins to Synapses Is Regulated by their C-Terminal Sequences

(2008) R. Fairless et al.   JOURNAL OF NEUROSCIENCE

Biocompatible surfactants for water-in-fluorocarbon emulsions

(2008) C. Holtze et al.   LAB ON A CHIP

Neuroligins and neurexins link synaptic function to cognitive disease

(2008) Thomas C. Südhof   NATURE

GFP Reconstitution Across Synaptic Partners (GRASP) Defines Cell Contacts and Synapses in Living Nervous Systems

(2008) Evan H. Feinberg et al.   NEURON