The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms

Global Mapping of Small RNA-Target Interactions in Bacteria

(2016) Sahar Melamed et al.   MOLECULAR CELL

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

(2016) Jong Ghut Ashley Aw et al.   MOLECULAR CELL

Global Mapping of Human RNA-RNA Interactions

(2016) Eesha Sharma et al.   MOLECULAR CELL

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Analysis and Subcellular Protein Localization Reveal Specific Features of the Essential WalKR System in Staphylococcus aureus

(2016) Olivier Poupel et al.   PLoS One

Various checkpoints prevent the synthesis ofStaphylococcus aureuspeptidoglycan hydrolase LytM in the stationary growth phase

(2016) Efthimia Lioliou et al.   RNA Biology

A game of tag: MAPS catches up on RNA interactomes

(2016) Marie-Claude Carrier et al.   RNA Biology

The Staphylococcus aureus Global Regulator MgrA Modulates Clumping and Virulence by Controlling Surface Protein Expression

(2016) Heidi A. Crosby et al.   PLoS Pathogens

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

(2016) Hugo Varet et al.   PLoS One

Accelerating Discovery and Functional Analysis of Small RNAs with New Technologies

(2015) Lars Barquist et al.   Annual Review of Genetics

Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA

(2015) M. Miyakoshi et al.   EMBO JOURNAL

A 3′ External Transcribed Spacer in a tRNA Transcript Acts as a Sponge for Small RNAs to Prevent Transcriptional Noise

(2015) David Lalaouna et al.   MOLECULAR CELL

RNAIII of theStaphylococcus aureus agrsystem activates global regulator MgrA by stabilizing mRNA

(2015) Ravi Kr. Gupta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis

(2015) Sylvain Durand et al.   PLoS Genetics

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of Bacteriophage-Encoded Anti-sRNAs in Pathogenic Escherichia coli

(2014) Jai J. Tree et al.   MOLECULAR CELL

A multicopy sRNA ofListeria monocytogenesregulates expression of the virulence adhesin LapB

(2014) Susanne Sievers et al.   NUCLEIC ACIDS RESEARCH

Transcriptome-Wide Analyses of 5′-Ends in RNase J Mutants of a Gram-Positive Pathogen Reveal a Role in RNA Maturation, Regulation and Degradation

(2014) Patrick Linder et al.   PLoS Genetics

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus

(2014) Cédric Romilly et al.   PLoS Pathogens

The importance of regulatory RNAs in Staphylococcus aureus

(2013) Arnaud Tomasini et al.   INFECTION GENETICS AND EVOLUTION

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Peptidoglycan Crosslinking Relaxation Plays an Important Role in Staphylococcus aureus WalKR-Dependent Cell Viability

(2011) Aurelia Delaune et al.   PLoS One

The Staphylococcus aureus RNome and Its Commitment to Virulence

(2011) Brice Felden et al.   PLoS Pathogens

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

The phage-related chromosomal islands of Gram-positive bacteria

(2010) Richard P. Novick et al.   NATURE REVIEWS MICROBIOLOGY

A Staphylococcus aureus Small RNA Is Required for Bacterial Virulence and Regulates the Expression of an Immune-Evasion Molecule

(2010) Svetlana Chabelskaya et al.   PLoS Pathogens

Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target

(2009) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

A Homolog of Formyl Peptide Receptor-Like 1 (FPRL1) Inhibitor from Staphylococcus aureus (FPRL1 Inhibitory Protein) That Inhibits FPRL1 and FPR

(2009) C. Prat et al.   JOURNAL OF IMMUNOLOGY

In vivo expression and purification of aptamer-tagged small RNA regulators

(2009) Nelly Said et al.   NUCLEIC ACIDS RESEARCH

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A matter of life and death: cell wall homeostasis and the WalKR (YycGF) essential signal transduction pathway

(2008) Sarah Dubrac et al.   MOLECULAR MICROBIOLOGY