Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve

The essential genomic landscape of the commensal Bifidobacterium breve UCC2003

(2017) Lorena Ruiz et al.   Scientific Reports

Gut Bifidobacteria Populations in Human Health and Aging

(2016) Silvia Arboleya et al.   Frontiers in Microbiology

Bifidobacterium breve UCC2003 metabolises the human milk oligosaccharides lacto-N-tetraose and lacto-N-neo-tetraose through overlapping, yet distinct pathways

(2016) Kieran James et al.   Scientific Reports

Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems

(2015) A. O’Callaghan et al.   BMC GENOMICS

Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12

(2015) Brian P. Anton et al.   PLoS One

Metabolism of Sialic Acid by Bifidobacterium breve UCC2003

(2014) Muireann Egan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative genomics of the Bifidobacterium breve taxon

(2014) Francesca Bottacini et al.   BMC GENOMICS

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

(2014) Pedro H. Oliveira et al.   NUCLEIC ACIDS RESEARCH

Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis

(2014) Mary O′Connell Motherway et al.   PLoS One

Modeling the evolution of molecular systems from a mechanistic perspective

(2014) Jayson Gutiérrez et al.   TRENDS IN PLANT SCIENCE

Intestinal microbiota in health and disease: Role of bifidobacteria in gut homeostasis

(2014) Rafael Tojo   WORLD JOURNAL OF GASTROENTEROLOGY

Bacteriophage Orphan DNA Methyltransferases: Insights from Their Bacterial Origin, Function, and Occurrence

(2013) James Murphy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consumption of human milk glycoconjugates by infant-associated bifidobacteria: mechanisms and implications

(2013) D. Garrido et al.   MICROBIOLOGY-SGM

Comparative genomics of defense systems in archaea and bacteria

(2013) Kira S. Makarova et al.   NUCLEIC ACIDS RESEARCH

Transposon Mutagenesis in Bifidobacterium breve: Construction and Characterization of a Tn5 Transposon Mutant Library for Bifidobacterium breve UCC2003

(2013) Lorena Ruiz et al.   PLoS One

Bifidobacterial Succession and Correlation Networks in a Large Unselected Cohort of Mothers and Their Children

(2012) E. Avershina et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

(2012) Luke K. Ursell et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

DNA methylome analysis using short bisulfite sequencing data

(2012) Felix Krueger et al.   NATURE METHODS

Diversity of Bifidobacteria within the Infant Gut Microbiota

(2012) Francesca Turroni et al.   PLoS One

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

(2011) M. O'Connell Motherway et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Bifidobacterium population analysis in the infant gut by direct mapping of genomic hybridization patterns: potential for monitoring temporal development and effects of dietary regimens

(2010) Rolf Boesten et al.   Microbial Biotechnology

Improvement of bacterial transformation efficiency using plasmid artificial modification

(2008) Kazumasa Yasui et al.   NUCLEIC ACIDS RESEARCH

Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis inBifidobacterium breveUCC2003

(2008) Mary O'Connell Motherway et al.   Microbial Biotechnology