Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny

(2017) Kasey K. Pham et al.   GENOME

Phylogenomics reveals a complex evolutionary history of lobed-leaf white oaks in western North America

(2017) John D. McVay et al.   GENOME

Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus)

(2017) Sorel Fitz-Gibbon et al.   GENOME

Plant phylogeny as a window on the evolution of hyperdiversity in the tropical rainforest biome

(2017) Wolf L. Eiserhardt et al.   NEW PHYTOLOGIST

Extensive recent secondary contacts between four European white oak species

(2017) Thibault Leroy et al.   NEW PHYTOLOGIST

A genetic legacy of introgression confounds phylogeny and biogeography in oaks

(2017) John D. McVay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary trade-offs between drought resistance mechanisms across a precipitation gradient in a seasonally dry tropical oak (Quercus oleoides)

(2017) Jose A. Ramírez-Valiente et al.   TREE PHYSIOLOGY

Population-Level Differentiation in Growth Rates and Leaf Traits in Seedlings of the Neotropical Live Oak Quercus oleoides Grown under Natural and Manipulated Precipitation Regimes

(2017) Jose A. Ramírez-Valiente et al.   Frontiers in Plant Science

Speciation, Ecological Opportunity, and Latitude

(2016) Dolph Schluter   AMERICAN NATURALIST

Plant diversity patterns in neotropical dry forests and their conservation implications

(2016) et al.   SCIENCE

Specimens at the Center: An Informatics Workflow and Toolkit for Specimen-level Analysis of Public DNA Database Data

(2016) et al.   SYSTEMATIC BOTANY

Fast and accurate detection of evolutionary shifts in Ornstein-Uhlenbeck models

(2016) Mohammad Khabbazian et al.   Methods in Ecology and Evolution

Biogeographic analysis of the woody plants of the Southern Appalachians: Implications for the origins of a regional flora

(2015) Paul S. Manos et al.   AMERICAN JOURNAL OF BOTANY

Historical introgression among the American live oaks and the comparative nature of tests for introgression

(2015) Deren A. R. Eaton et al.   EVOLUTION

How Are Oaks Distributed in the Neotropics? A Perspective from Species Turnover, Areas of Endemism, and Climatic Niches

(2015) Hernando Rodríguez-Correa et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Phylogeny and biogeography of the American live oaks (QuercussubsectionVirentes): a genomic and population genetics approach

(2015) Jeannine Cavender-Bares et al.   MOLECULAR ECOLOGY

Phylogenetic investigation of the complex evolutionary history of dispersal mode and diversification rates across living and fossil Fagales

(2015) Kathryn Larson-Johnson   NEW PHYTOLOGIST

On the complexity of triggering evolutionary radiations

(2015) Yanis Bouchenak-Khelladi et al.   NEW PHYTOLOGIST

Detecting Adaptive Evolution in Phylogenetic Comparative Analysis Using the Ornstein–Uhlenbeck Model

(2015) Clayton E. Cressler et al.   SYSTEMATIC BIOLOGY

Comparative Analysis of Principal Components Can be Misleading

(2015) Josef C. Uyeda et al.   SYSTEMATIC BIOLOGY

Taxonomic Relationships and Gene Flow in Four North American Quercus Species (Quercus section Lobatae)

(2015) Sandra A. Owusu et al.   SYSTEMATIC BOTANY

An engine for global plant diversity: highest evolutionary turnover and emigration in the American tropics

(2015) Alexandre Antonelli et al.   Frontiers in Genetics

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Remaining natural vegetation in the global biodiversity hotspots

(2014) Sean Sloan et al.   BIOLOGICAL CONSERVATION

Fagaceae pollen from the early Cenozoic of West Greenland: revisiting Engler’s and Chaney’s Arcto-Tertiary hypotheses

(2014) Friðgeir Grímsson et al.   PLANT SYSTEMATICS AND EVOLUTION

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

A Framework Phylogeny of the American Oak Clade Based on Sequenced RAD Data

(2014) Andrew L. Hipp et al.   PLoS One

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

Shifts in diversification rates and clade ages explain species richness in higher-level sedge taxa (Cyperaceae)

(2013) Marcial Escudero et al.   AMERICAN JOURNAL OF BOTANY

Molecular dating of phylogenies by likelihood methods: A comparison of models and a new information criterion

(2013) Emmanuel Paradis   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biodiversidad de Pinophyta (coníferas) en México

(2013) David S. Gernandt et al.   Revista Mexicana de Biodiversidad

New Approaches to the Biogeography and Areas of Endemism of Red Oaks (Quercus L., Section Lobatae)

(2013) Andrés Torres-Miranda et al.   SYSTEMATIC BIOLOGY

Diversification rates and chromosome evolution in the most diverse angiosperm genus of the temperate zone (Carex, Cyperaceae)

(2012) Marcial Escudero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of leaf form correlates with tropical-temperate transitions in Viburnum (Adoxaceae)

(2012) S. B. Schmerler et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Clade Age and Species Richness Are Decoupled Across the Eukaryotic Tree of Life

(2012) Daniel L. Rabosky et al.   PLOS BIOLOGY

Conservation biogeography of red oaks (Quercus , section Lobatae ) in Mexico and Central America

(2011) Andrés Torres-Miranda et al.   AMERICAN JOURNAL OF BOTANY

A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES

(2011) Jonathan M. Eastman et al.   EVOLUTION

Regression shrinkage and selection via the lasso: a retrospective

(2011) Robert Tibshirani   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Fagaceae from the early Oligocene of Central Europe: Persisting new world and emerging old world biogeographic links

(2011) Thomas Denk et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Causes of Plant Diversification in the Cape Biodiversity Hotspot of South Africa

(2011) Jan Schnitzler et al.   SYSTEMATIC BIOLOGY

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Accelerated rates of climatic-niche evolution underlie rapid species diversification

(2010) Kenneth H. Kozak et al.   ECOLOGY LETTERS

CAN PARALLEL DIVERSIFICATION OCCUR IN SYMPATRY? REPEATED PATTERNS OF BODY-SIZE EVOLUTION IN COEXISTING CLADES OF NORTH AMERICAN SALAMANDERS

(2009) Kenneth H. Kozak et al.   EVOLUTION

Significance of Pollen Characteristics for Infrageneric Classification and Phylogeny in Quercus (Fagaceae)

(2009) Thomas Denk et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Phylogenetic and trait similarity to a native species predict herbivory on non-native oaks

(2009) I. S. Pearse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Cooling During the Eocene-Oligocene Climate Transition

(2009) Z. Liu et al.   SCIENCE

Phylogenetic Logistic Regression for Binary Dependent Variables

(2009) Anthony R. Ives et al.   SYSTEMATIC BIOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

A phylogenetic perspective on the distribution of plant diversity

(2008) M. J. Donoghue   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA