Regulation of genome-wide DNA methylation by mobile small RNAs

Exploiting induced and natural epigenetic variation for crop improvement

(2017) Nathan M. Springer et al.   NATURE REVIEWS GENETICS

Botrytis small RNA Bc-siR37 suppresses plant defense genes by cross-kingdom RNAi

(2017) Ming Wang et al.   RNA Biology

Epigenome Editing of Potato by Grafting Using Transgenic Tobacco as siRNA Donor

(2016) Atsushi Kasai et al.   PLoS One

Mobile small RNAs regulate genome-wide DNA methylation

(2016) Mathew G. Lewsey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mobile small RNAs and their role in regulating cytosine methylation of DNA

(2016) Thomas J. Hardcastle et al.   RNA Biology

DNA Methylation Signatures of the Plant Chromomethyltransferases

(2016) Quentin Gouil et al.   PLoS Genetics

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis

(2016) Jian-Hua Zhao et al.   Scientific Reports

Exploiting mobile RNA silencing for crop improvement

(2015) Jochen Gohlke et al.   AMERICAN JOURNAL OF BOTANY

Transcriptional analysis of phloem-associated cells of potato

(2015) Tian Lin et al.   BMC GENOMICS

RNA silencing movement in plants

(2015) Glykeria Mermigka et al.   Journal of Integrative Plant Biology

Going mobile: Non-cell-autonomous small RNAs shape the genetic landscape of plants

(2015) Douglas E. Pyott et al.   PLANT BIOTECHNOLOGY JOURNAL

DNA METHYLTRANSFERASE 1 is involved in mCG and mCCG DNA methylation and is essential for sporophyte development in Physcomitrella patens

(2015) Rafael Yaari et al.   PLANT MOLECULAR BIOLOGY

Epigenetic transitions leading to heritable, RNA-mediated de novo silencing inArabidopsis thaliana

(2015) Donna M. Bond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

(2015) Jörg Hagmann et al.   PLoS Genetics

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

(2014) Xuehua Zhong et al.   CELL

ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation

(2014) A. D. McCue et al.   EMBO JOURNAL

Rootstock-to-scion transfer of transgene-derived small interfering RNAs and their effect on virus resistance in nontransgenic sweet cherry

(2014) Dongyan Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

Systemic delivery of siRNA in pumpkin by a plant PHLOEM SMALL RNA-BINDING PROTEIN 1-ribonucleoprotein complex

(2014) Byung-Kook Ham et al.   PLANT JOURNAL

Graft-transmissible movement of inverted-repeat-induced siRNA signals into flowers

(2014) Wenna Zhang et al.   PLANT JOURNAL

Mapping the Epigenetic Basis of Complex Traits

(2014) S. Cortijo et al.   SCIENCE

DNA methylation as a system of plant genomic immunity

(2014) M. Yvonne Kim et al.   TRENDS IN PLANT SCIENCE

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

(2014) Danelle K. Seymour et al.   PLoS Genetics

Mobile gene silencing inArabidopsisis regulated by hydrogen peroxide

(2014) Dacheng Liang et al.   PeerJ

Gene silencing in plants: A diversity of pathways

(2013) Angel Emilio Martínez de Alba et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Grafting with rootstocks induces extensive transcriptional re-programming in the shoot apical meristem of grapevine

(2013) Sarah Cookson et al.   BMC PLANT BIOLOGY

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

A Protodermal miR394 Signal Defines a Region of Stem Cell Competence in the Arabidopsis Shoot Meristem

(2013) Steffen Knauer et al.   DEVELOPMENTAL CELL

Epigenetic differences between shoots and roots inArabidopsisreveals tissue-specific regulation

(2013) Nicolas Widman et al.   Epigenetics

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

(2013) M. Regulski et al.   GENOME RESEARCH

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population

(2013) R. J. Schmitz et al.   GENOME RESEARCH

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

(2013) S. R. Eichten et al.   PLANT CELL

The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs

(2013) S. Nuthikattu et al.   PLANT PHYSIOLOGY

Inter-Species Grafting Caused Extensive and Heritable Alterations of DNA Methylation in Solanaceae Plants

(2013) Rui Wu et al.   PLoS One

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

Interspecific RNA Interference of SHOOT MERISTEMLESS-Like Disrupts Cuscuta pentagona Plant Parasitism

(2012) A. Alakonya et al.   PLANT CELL

Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production

(2012) Chongyuan Luo et al.   PLANT JOURNAL

Roles of DICER-LIKE and ARGONAUTE Proteins in TAS-Derived Small Interfering RNA-Triggered DNA Methylation

(2012) L. Wu et al.   PLANT PHYSIOLOGY

Gene Silencing in Arabidopsis Spreads from the Root to the Shoot, through a Gating Barrier, by Template-Dependent, Nonvascular, Cell-to-Cell Movement

(2012) D. Liang et al.   PLANT PHYSIOLOGY

Epigenetic and epigenomic variation in Arabidopsis thaliana

(2012) Robert J. Schmitz et al.   TRENDS IN PLANT SCIENCE

The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

(2012) Nicole de la Chaux et al.   Mobile DNA

Mobile 24 nt Small RNAs Direct Transcriptional Gene Silencing in the Root Meristems of Arabidopsis thaliana

(2011) Charles W. Melnyk et al.   CURRENT BIOLOGY

A mobile signal transported over a long distance induces systemic transcriptional gene silencing in a grafted partner

(2011) Songling Bai et al.   JOURNAL OF EXPERIMENTAL BOTANY

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Comparative analysis of non-autonomous effects of tasiRNAs and miRNAs in Arabidopsis thaliana

(2010) Felipe Fenselau de Felippes et al.   NUCLEIC ACIDS RESEARCH

Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

(2010) A. Molnar et al.   SCIENCE

Pattern formation via small RNA mobility

(2009) D. H. Chitwood et al.   GENES & DEVELOPMENT

Endogenous TasiRNAs Mediate Non-Cell Autonomous Effects on Gene Regulation in Arabidopsis thaliana

(2009) Rebecca Schwab et al.   PLoS One

Identification and characterization of small RNAs from the phloem of Brassica napus

(2008) Anja Buhtz et al.   PLANT JOURNAL