3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage

Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses

(2017) Shijie C Zheng et al.   NATURE METHODS

Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome

(2016) Markus Kornprobst et al.   CELL

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast

(2016) Liman Zhang et al.   GENES & DEVELOPMENT

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes

(2016) Shan Wu et al.   NATURE

The PIN domain endonuclease Utp24 cleaves pre-ribosomal RNA at two coupled sites in yeast and humans

(2016) Graeme R. Wells et al.   NUCLEIC ACIDS RESEARCH

Architecture of the yeast small subunit processome

(2016) Malik Chaker-Margot et al.   SCIENCE

Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases

(2016) Urszula M. McCaughan et al.   Nature Communications

UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly

(2016) Mirjam Hunziker et al.   Nature Communications

Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2

(2016) Dari Kimanius et al.   eLife

The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins

(2015) Matthias Thoms et al.   CELL

Chaperoning 5S RNA assembly

(2015) Clément Madru et al.   GENES & DEVELOPMENT

Architecture of the Rix1–Rea1 checkpoint machinery during pre-60S-ribosome remodeling

(2015) Clara Barrio-Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Architecture of the Rix1–Rea1 checkpoint machinery during pre-60S-ribosome remodeling

(2015) Clara Barrio-Garcia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The DEAH-box Helicase Dhr1 Dissociates U3 from the Pre-rRNA to Promote Formation of the Central Pseudoknot

(2015) Richa Sardana et al.   PLOS BIOLOGY

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

(2015) Alan Brown et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Initiation of Translation by Cricket Paralysis Virus IRES Requires Its Translocation in the Ribosome

(2014) Israel S. Fernández et al.   CELL

Interaction between Ribosome Assembly Factors Krr1 and Faf1 Is Essential for Formation of Small Ribosomal Subunit in Yeast

(2014) Sanduo Zheng et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

In Vitro Reconstitution of Yeast tUTP/UTP A and UTP B Subcomplexes Provides New Insights into Their Modular Architecture

(2014) Gisela Pöll et al.   PLoS One

Cotranscriptional events in eukaryotic ribosome synthesis

(2014) Tomasz W. Turowski et al.   Wiley Interdisciplinary Reviews-RNA

An overview of pre-ribosomal RNA processing in eukaryotes

(2014) Anthony K. Henras et al.   Wiley Interdisciplinary Reviews-RNA

Conformation-independent structural comparison of macromolecules withProSMART

(2014) Robert A. Nicholls et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly

(2013) Simon Lebaron et al.   MOLECULAR CELL

The Complexity of Human Ribosome Biogenesis Revealed by Systematic Nucleolar Screening of Pre-rRNA Processing Factors

(2013) Lionel Tafforeau et al.   MOLECULAR CELL

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

Scalable web services for the PSIPRED Protein Analysis Workbench

(2013) Daniel W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

Structural and functional analysis of Utp23, a yeast ribosome synthesis factor with degenerate PIN domain

(2013) J. Lu et al.   RNA

Imp3 unfolds stem structures in pre-rRNA and U3 snoRNA to form a duplex essential for small subunit processing

(2013) B. N. Shah et al.   RNA

An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme

(2013) Jinzhong Lin et al.   PLOS BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Prevention of overfitting in cryo-EM structure determination

(2012) Sjors H W Scheres et al.   NATURE METHODS

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome

(2012) Åsa Segerstolpe et al.   NUCLEIC ACIDS RESEARCH

Automated 3D structure composition for large RNAs

(2012) Mariusz Popenda et al.   NUCLEIC ACIDS RESEARCH

Rcl1 Protein, a Novel Nuclease for 18 S Ribosomal RNA Production

(2011) Darryl M. Horn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural basis for site-specific ribose methylation by box C/D RNA protein complexes

(2011) Jinzhong Lin et al.   NATURE

Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes

(2011) Jorge Pérez-Fernández et al.   NUCLEIC ACIDS RESEARCH

The initial U3 snoRNA:pre-rRNA base pairing interaction required for pre-18S rRNA folding revealed by in vivo chemical probing

(2011) Laura M. Dutca et al.   NUCLEIC ACIDS RESEARCH

A second base pair interaction between U3 small nucleolar RNA and the 5′-ETS region is required for early cleavage of the yeast pre-ribosomal RNA

(2011) Nathalie Marmier-Gourrier et al.   NUCLEIC ACIDS RESEARCH

Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates

(2011) B. S. Strunk et al.   SCIENCE

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking

(2010) Sander Granneman et al.   EMBO JOURNAL

An RNA Conformational Switch Regulates Pre-18S rRNA Cleavage

(2010) Allison C. Lamanna et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis

(2010) Seth R. Thomas et al.   NUCLEIC ACIDS RESEARCH

The Bowen–Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA

(2010) Britta Meyer et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure of the Eukaryotic Ribosome

(2010) A. Ben-Shem et al.   SCIENCE

Crystal Structure of the Eukaryotic 40S Ribosomal Subunit in Complex with Initiation Factor 1

(2010) J. Rabl et al.   SCIENCE

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

(2009) S. Granneman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA