The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease

Enteric Viruses Ameliorate Gut Inflammation via Toll-like Receptor 3 and Toll-like Receptor 7-Mediated Interferon-β Production

(2016) Jin-Young Yang et al.   IMMUNITY

Gut microbiome–derived metabolites modulate intestinal epithelial cell damage and mitigate graft-versus-host disease

(2016) Nathan D Mathewson et al.   NATURE IMMUNOLOGY

Dietary antigens limit mucosal immunity by inducing regulatory T cells in the small intestine

(2016) K. S. Kim et al.   SCIENCE

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes

(2015) Manuel Kleiner et al.   BMC GENOMICS

Fecal calprotectin and α1-antitrypsin dynamics in gastrointestinal GvHD

(2015) A O'Meara et al.   BONE MARROW TRANSPLANTATION

Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

(2015) Jason M. Norman et al.   CELL

Adenovirus infection and disease in paediatric haematopoietic stem cell transplant patients: clues for antiviral pre-emptive treatment

(2015) L. Feghoul et al.   CLINICAL MICROBIOLOGY AND INFECTION

Maintenance of picobirnavirus (PBV) infection in an adult orangutan (Pongo pygmaeus) and genetic diversity of excreted viral strains during a three-year period

(2015) Gisela Masachessi et al.   INFECTION GENETICS AND EVOLUTION

Comparing viral metagenomics methods using a highly multiplexed human viral pathogens reagent

(2015) Linlin Li et al.   JOURNAL OF VIROLOGICAL METHODS

Diversity of gut microflora is required for the generation of B cell with regulatory properties in a skin graft model

(2015) R. Alhabbab et al.   Scientific Reports

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

(2014) S. N. Naccache et al.   GENOME RESEARCH

Temporal Response of the Human Virome to Immunosuppression and Antiviral Therapy

(2013) Iwijn De Vlaminck et al.   CELL

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

HHV-6 Reactivation and Associated Sequelae after Hematopoietic Cell Transplantation

(2012) Danielle M. Zerr et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Fecal calprotectin and alpha-1 antitrypsin predict severity and response to corticosteroids in gastrointestinal graft-versus-host disease

(2012) P. Rodriguez-Otero et al.   BLOOD

Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation

(2012) Robert R. Jenq et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Acute Diarrhea in West African Children: Diverse Enteric Viruses and a Novel Parvovirus Genus

(2012) T. G. Phan et al.   JOURNAL OF VIROLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel Organisms

(2012) Yemin Lan et al.   PLoS One

Picobirnavirus infections: viral persistence and zoonotic potential

(2012) Balasubramanian Ganesh et al.   REVIEWS IN MEDICAL VIROLOGY

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

The Complex Relationship between Human Herpesvirus 6 and Acute Graft-versus-Host Disease

(2011) Claire Pichereau et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Norovirus gastroenteritis causes severe and lethal complications after chemotherapy and hematopoietic stem cell transplantation

(2011) S. Schwartz et al.   BLOOD

The human gut virome: Inter-individual variation and dynamic response to diet

(2011) S. Minot et al.   GENOME RESEARCH

Human Picobirnaviruses Identified by Molecular Screening of Diarrhea Samples

(2010) M. van Leeuwen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis

(2009) J. G. Victoria et al.   JOURNAL OF VIROLOGY

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

(2008) Frank M You et al.   BMC BIOINFORMATICS

Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery

(2008) Stacy R. Finkbeiner et al.   PLoS Pathogens