Bifiguratus adelaidae, gen. et sp. nov., a new member of Mucoromycotina in endophytic and soil-dwelling habitats

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

(2017) J. Uehling et al.   ENVIRONMENTAL MICROBIOLOGY

Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota

(2017) Paola Bonfante et al.   ISME Journal

How to know the fungi: combining field inventories and DNA-barcoding to document fungal diversity

(2017) Camille Truong et al.   NEW PHYTOLOGIST

Ralstonia solanacearum lipopeptide induces chlamydospore development in fungi and facilitates bacterial entry into fungal tissues

(2016) Joseph E Spraker et al.   ISME Journal

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data

(2016) Joseph W. Spatafora et al.   MYCOLOGIA

Top 50 most wanted fungi

(2016) R. Henrik Nilsson et al.   MycoKeys

A new view of the tree of life

(2016) Laura A. Hug et al.   Nature Microbiology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Functional analysis of liverworts in dual symbiosis with Glomeromycota and Mucoromycotina fungi under a simulated Palaeozoic CO2 decline

(2015) Katie J Field et al.   ISME Journal

Molecular evolution patterns reveal life history features of mycoplasma-related endobacteria associated with arbuscular mycorrhizal fungi

(2015) Kevin H. Toomer et al.   MOLECULAR ECOLOGY

Morphology and phylogeny of four Endogone species and Sphaerocreas pubescens collected in Japan

(2015) Kohei Yamamoto et al.   MYCOLOGICAL PROGRESS

New taxa of Ambomucor (Mucorales, Mucoromycotina) from China

(2015) Xiao-Yong Liu et al.   MYCOTAXON

Isolation and identification of endophytes from roots of Cymbidium goeringii and Cymbidium faberi (Orchidaceae)

(2015) Yun Yu et al.   NOVA HEDWIGIA

Molecular Identification of Mycorrhizae of Cymbidium kanran (Orchidaceae) on Jeju Island, Korea

(2015) Ji Won Hong et al.   MYCOBIOLOGY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Endogone, one of the oldest plant-associated fungi, host unique Mollicutes-related endobacteria

(2014) Alessandro Desirò et al.   NEW PHYTOLOGIST

First evidence of mutualism between ancient plant lineages (Haplomitriopsida liverworts) and Mucoromycotina fungi and its response to simulated Palaeozoic changes in atmospheric CO2

(2014) Katie J. Field et al.   NEW PHYTOLOGIST

Isolation and biological activities of an endophytic Mortierella alpina strain from the Antarctic moss Schistidium antarctici

(2013) Itamar S. Melo et al.   EXTREMOPHILES

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Fusarium torreyae sp. nov., a pathogen causing canker disease of Florida torreya (Torreya taxifolia), a critically endangered conifer restricted to northern Florida and southwestern Georgia

(2013) Takayuki Aoki et al.   MYCOLOGIA

Sphaerocreas pubescens is a member of the Mucoromycotina closely related to fungi associated with liverworts and hornworts

(2013) Dai Hirose et al.   MYCOSCIENCE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Changes in Fungal Community Composition in Response to Elevated Atmospheric CO2 and Nitrogen Fertilization Varies with Soil Horizon

(2013) Carolyn F. Weber et al.   Frontiers in Microbiology

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Isomucor (Mucoromycotina): a new genus from a Cerrado reserve in state of São Paulo, Brazil

(2012) José Ivanildo de Souza et al.   MYCOLOGIA

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

The anamorphic genus Calcarisporiella is a new member of the Mucoromycotina

(2011) Dai Hirose et al.   MYCOSCIENCE

Sequencing the fungal tree of life

(2011) F. Martin et al.   NEW PHYTOLOGIST

Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes

(2010) M. T. Hoffman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes

(2010) Maria Naumann et al.   ISME Journal

Detection of Betaproteobacteria inside the Mycelium of the Fungus Mortierella elongata

(2010) Yoshinori Sato et al.   MICROBES AND ENVIRONMENTS

Community Analysis Reveals Close Affinities Between Endophytic and Endolichenic Fungi in Mosses and Lichens

(2010) Jana M. U’Ren et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Purification and germination ofCandida albicansandCandida dubliniensischlamydospores cultured in liquid media

(2009) Francesco Citiulo et al.   FEMS YEAST RESEARCH

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH