FuzzyID2: A software package for large data set species identification via barcoding and metabarcoding using hidden Markov models and fuzzy set methods
出版年份 2017 全文链接
标题
FuzzyID2: A software package for large data set species identification via barcoding and metabarcoding using hidden Markov models and fuzzy set methods
作者
关键词
-
出版物
Molecular Ecology Resources
Volume 18, Issue 3, Pages 666-675
出版商
Wiley
发表日期
2017-11-20
DOI
10.1111/1755-0998.12738
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- eDNA metabarcoding: a promising method for anuran surveys in highly diverse tropical forests
- (2017) Carla M. Lopes et al. Molecular Ecology Resources
- Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
- (2016) Alice Valentini et al. MOLECULAR ECOLOGY
- Evaluating and optimizing the performance of software commonly used for the taxonomic classification of DNA metabarcoding sequence data
- (2016) Rodney T. Richardson et al. Molecular Ecology Resources
- BarcodingR: an integrated r package for species identification using DNA barcodes
- (2016) Ai-bing Zhang et al. Methods in Ecology and Evolution
- Plant-herbivorous beetle networks: molecular characterization of trophic ecology within a threatened steppic environment
- (2015) Ł. Kajtoch et al. MOLECULAR ECOLOGY
- obitools: aunix-inspired software package for DNA metabarcoding
- (2015) Frédéric Boyer et al. Molecular Ecology Resources
- DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
- (2015) Tyler R. Kartzinel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- TIPP: taxonomic identification and phylogenetic profiling
- (2014) Nam-phuong Nguyen et al. BIOINFORMATICS
- VIP Barcoding: composition vector-based software for rapid species identification based on DNA barcoding
- (2014) Long Fan et al. Molecular Ecology Resources
- 20 years since the introduction of DNA barcoding: from theory to application
- (2013) Živa Fišer Pečnikar et al. JOURNAL OF APPLIED GENETICS
- Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples
- (2013) Simon Boitard et al. Molecular Ecology Resources
- Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
- (2013) Akifumi S. Tanabe et al. PLoS One
- Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
- (2012) David A W Soergel et al. ISME Journal
- Molecular-based rapid inventories of sympatric diversity: A comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of amphibians
- (2012) Andrea Paz et al. JOURNAL OF BIOSCIENCES
- DNA barcoding a regional fauna: Irish solitary bees
- (2012) Karl N. Magnacca et al. Molecular Ecology Resources
- |SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization - application to species and environmental barcoding
- (2012) S. PIRY et al. Molecular Ecology Resources
- A New Method for Species Identification via Protein-Coding and Non-Coding DNA Barcodes by Combining Machine Learning with Bioinformatic Methods
- (2012) Ai-bing Zhang et al. PLoS One
- Barcoding's next top model: an evaluation of nucleotide substitution models for specimen identification
- (2012) Rupert A. Collins et al. Methods in Ecology and Evolution
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
- A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding
- (2011) A.-B. ZHANG et al. MOLECULAR ECOLOGY
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- DNA barcode-based molecular identification system for fish species
- (2010) Sungmin Kim et al. MOLECULES AND CELLS
- Validation of the ITS2 Region as a Novel DNA Barcode for Identifying Medicinal Plant Species
- (2010) Shilin Chen et al. PLoS One
- DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
- (2009) Frederic Austerlitz et al. BMC BIOINFORMATICS
- Testing the Reliability of Genetic Methods of Species Identification via Simulation
- (2008) Howard A. Ross et al. SYSTEMATIC BIOLOGY
- Inferring Species Membership Using DNA Sequences with Back-Propagation Neural Networks
- (2008) A. B. Zhang et al. SYSTEMATIC BIOLOGY
- Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
- (2008) Kasper Munch et al. SYSTEMATIC BIOLOGY
- DNA barcoding for ecologists
- (2008) Alice Valentini et al. TRENDS IN ECOLOGY & EVOLUTION
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search