Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum

Patterns of bacterial diversity in the marine planktonic particulate matter continuum

(2017) Mireia Mestre et al.   ISME Journal

Vertical distribution of major photosynthetic picoeukaryotic groups in stratified marine waters

(2016) Ana M. Cabello et al.   ENVIRONMENTAL MICROBIOLOGY

Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean

(2016) William D Orsi et al.   ISME Journal

Distribution of phytoplankton groups within the deep chlorophyll maximum

(2016) Mikel Latasa et al.   LIMNOLOGY AND OCEANOGRAPHY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter

(2015) William D Orsi et al.   ISME Journal

Bacterial diversity and community composition from seasurface to subseafloor

(2015) Emily A Walsh et al.   ISME Journal

Particle-association lifestyle is a phylogenetically conserved trait in bathypelagic prokaryotes

(2015) Guillem Salazar et al.   MOLECULAR ECOLOGY

Genomes of Planktonic Acidimicrobiales : Widening Horizons for Marine Actinobacteria by Metagenomics

(2015) Carolina Megumi Mizuno et al.   mBio

Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump

(2015) S. Agusti et al.   Nature Communications

Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea

(2015) Angelika Rieck et al.   Frontiers in Microbiology

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization

(2014) Mina Bižić-Ionescu et al.   ENVIRONMENTAL MICROBIOLOGY

A new class of marine Euryarchaeota group II from the mediterranean deep chlorophyll maximum

(2014) Ana-Belen Martin-Cuadrado et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone

(2013) Sangita Ganesh et al.   ISME Journal

Microbial control of the dark end of the biological pump

(2013) Gerhard J. Herndl et al.   Nature Geoscience

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Bacterial Community Composition of South China Sea Sediments through Pyrosequencing-Based Analysis of 16S rRNA Genes

(2013) Daochen Zhu et al.   PLoS One

Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem

(2013) Maria W. Smith et al.   Frontiers in Microbiology

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA

(2013) Bibiana G. Crespo et al.   MicrobiologyOpen

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

(2012) Jessica A. Bryant et al.   ECOLOGY

Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing

(2012) Maria Vila-Costa et al.   ENVIRONMENTAL MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

Planctomycetes diversity associated with macroalgae

(2011) Olga Maria Lage et al.   FEMS MICROBIOLOGY ECOLOGY

Copepod guts as biogeochemical hotspots in the sea: Evidence from microelectrode profiling ofCalanusspp

(2011) Kam W. Tang et al.   LIMNOLOGY AND OCEANOGRAPHY

A microfluidic chemotaxis assay to study microbial behavior in diffusing nutrient patches

(2011) J.R. Seymour et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Going Deeper: Metagenome of a Hadopelagic Microbial Community

(2011) Emiley A. Eloe et al.   PLoS One

The Phylogenetic Diversity of Metagenomes

(2011) Steven W. Kembel et al.   PLoS One

Anaerobic Oxidation of Methane at a Marine Methane Seep in a Forearc Sediment Basin off Sumatra, Indian Ocean

(2011) Michael Siegert et al.   Frontiers in Microbiology

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

(2010) T Pommier et al.   AQUATIC MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea

(2010) Mia M Bengtsson et al.   BMC MICROBIOLOGY

A diversity of beta diversities: straightening up a concept gone awry. Part 1. Defining beta diversity as a function of alpha and gamma diversity

(2010) Hanna Tuomisto   ECOGRAPHY

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

Ecological consequences of bacterioplankton lifestyles: changes in concepts are needed

(2010) Hans-Peter Grossart   Environmental Microbiology Reports

Single-Cell Ecophysiology of Microbes as Revealed by Raman Microspectroscopy or Secondary Ion Mass Spectrometry Imaging

(2009) Michael Wagner   Annual Review of Microbiology

Atomic force microscopy reveals microscale networks and possible symbioses among pelagic marine bacteria

(2009) F Malfatti et al.   AQUATIC MICROBIAL ECOLOGY

Diversity of total and active free-living vs. particle-attached bacteria in the euphotic zone of the NW Mediterranean Sea

(2009) Jean-François Ghiglione et al.   FEMS MICROBIOLOGY LETTERS

Microbial community structure in the North Pacific ocean

(2009) Mark V Brown et al.   ISME Journal

Circumpolar synchrony in big river bacterioplankton

(2009) Byron C. Crump et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spatial distribution of Bacteria and Archaea and amoA gene copy numbers throughout the water column of the Eastern Mediterranean Sea

(2008) Daniele De Corte et al.   ISME Journal

Heterogeneous archaeal communities in the particle-rich environment of an arctic shelf ecosystem

(2008) Pierre E. Galand et al.   JOURNAL OF MARINE SYSTEMS