Environmental filtering by pH and soil nutrients drives community assembly in fungi at fine spatial scales

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Soil pH and mineral nutrients strongly influence truffles and other ectomycorrhizal fungi associated with commercial pecans (Carya illinoinensis)

(2017) Zai-Wei Ge et al.   PLANT AND SOIL

The theory of island biogeography applies to ectomycorrhizal fungi in subalpine tree “islands” at a fine scale

(2017) Sydney I. Glassman et al.   Ecosphere

Factors contributing to soil nitrogen mineralization and nitrification rates of forest soils in the Japanese archipelago

(2016) Rieko Urakawa et al.   FOREST ECOLOGY AND MANAGEMENT

Microbial legacies alter decomposition in response to simulated global change

(2016) Jennifer BH Martiny et al.   ISME Journal

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

(2015) Kabir G. Peay et al.   ECOLOGY LETTERS

Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest

(2015) Albert Barberán et al.   ECOLOGY LETTERS

Ectomycorrhizal fungal spore bank recovery after a severe forest fire: some like it hot

(2015) Sydney I Glassman et al.   ISME Journal

Tree diversity and species identity effects on soil fungi, protists and animals are context dependent

(2015) Leho Tedersoo et al.   ISME Journal

A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern

(2015) Sydney I. Glassman et al.   NEW PHYTOLOGIST

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide

(2014) Suzanne M. Prober et al.   ECOLOGY LETTERS

Ecological genomics meets community-level modelling of biodiversity: mapping the genomic landscape of current and future environmental adaptation

(2014) Matthew C. Fitzpatrick et al.   ECOLOGY LETTERS

Environmental filtering affects soil fungal community composition more than dispersal limitation at regional scales

(2014) Stephanie N. Kivlin et al.   Fungal Ecology

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale

(2014) Nicolas Chemidlin Prévost-Bouré et al.   PLoS One

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Soil properties and tree species drive ß-diversity of soil bacterial communities

(2014) William J. Landesman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mistaking geography for biology: inferring processes from species distributions

(2014) Dan. L. Warren et al.   TRENDS IN ECOLOGY & EVOLUTION

EXAMINING THE FULL EFFECTS OF LANDSCAPE HETEROGENEITY ON SPATIAL GENETIC VARIATION: A MULTIPLE MATRIX REGRESSION APPROACH FOR QUANTIFYING GEOGRAPHIC AND ECOLOGICAL ISOLATION

(2013) Ian J. Wang   EVOLUTION

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Phylogenetic relationships among host plants explain differences in fungal species richness and community composition in ectomycorrhizal symbiosis

(2013) Leho Tedersoo et al.   NEW PHYTOLOGIST

Environmental and historical imprints on beta diversity: insights from variation in rates of species turnover along gradients

(2013) M. C. Fitzpatrick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity

(2013) L. Ranjard et al.   Nature Communications

Environmental and topographic variables shape genetic structure and effective population sizes in the endangered Yosemite toad

(2012) Ian J. Wang   DIVERSITY AND DISTRIBUTIONS

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

Environment versus dispersal in the assembly of western Amazonian palm communities

(2012) Thea Kristiansen et al.   JOURNAL OF BIOGEOGRAPHY

Mycorrhizal Response to Experimental pH and P Manipulation in Acidic Hardwood Forests

(2012) Laurel A. Kluber et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition

(2012) Jennifer M. Talbot et al.   SOIL BIOLOGY & BIOCHEMISTRY

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar

(2011) LEHO TEDERSOO et al.   MOLECULAR ECOLOGY

Disentangling the Drivers of   Diversity Along Latitudinal and Elevational Gradients

(2011) N. J. B. Kraft et al.   SCIENCE

Rodent dispersal of fungal spores promotes seedling establishment away from mycorrhizal networks on Quercus garryana

(2010) J. L. Frank et al.   Botany

Order of plant host establishment alters the composition of arbuscular mycorrhizal communities

(2010) Natasha Teutsch Hausmann et al.   ECOLOGY

Evidence of dispersal limitation in soil microorganisms: Isolation reduces species richness on mycorrhizal tree islands

(2010) Kabir G. Peay et al.   ECOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics

(2010) A. S. Amend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Temporal and functional pattern of secreted enzyme activities in an ectomycorrhizal community

(2010) Pierre-Emmanuel Courty et al.   SOIL BIOLOGY & BIOCHEMISTRY

Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil

(2010) Johannes Rousk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mutualistic mycorrhiza-like symbiosis in the most ancient group of land plants

(2010) Claire P. Humphreys et al.   Nature Communications

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Belowground ectomycorrhizal fungal communities respond to liming in three southern Swedish coniferous forest stands

(2009) Rasmus Kjøller et al.   FOREST ECOLOGY AND MANAGEMENT

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot

(2009) Leho Tedersoo et al.   ISME Journal

Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages

(2009) Leho Tedersoo et al.   MYCORRHIZA

Ectomycorrhizal fungi of whitebark pine (a tree in peril) revealed by sporocarps and molecular analysis of mycorrhizae from treeline forests in the Greater Yellowstone Ecosystem

(2008) Katherine R. Mohatt et al.   Botany

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Inoculum potential of Rhizopogon spores increases with time over the first 4 yr of a 99-yr spore burial experiment

(2008) Thomas D. Bruns et al.   NEW PHYTOLOGIST

Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers

(2008) Leho Tedersoo et al.   NEW PHYTOLOGIST

Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA

(2008) C. Moritz et al.   SCIENCE