Pleistocene climatic changes drive diversification across a tropical savanna

Tropical specialist vs. climate generalist: Diversification and demographic history of sister species of Carlia skinks from northwestern Australia

(2017) Ana C. Afonso Silva et al.   MOLECULAR ECOLOGY

multi-dice : r package for comparative population genomic inference under hierarchical co-demographic models of independent single-population size changes

(2017) Alexander T. Xue et al.   Molecular Ecology Resources

A late Quaternary record of monsoon variability in the northwest Kimberley, Australia

(2017) Emily Field et al.   QUATERNARY INTERNATIONAL

Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics

(2017) Robert D. Edwards et al.   PLoS One

Phylogeography, hotspots and conservation priorities: an example from the Top End of Australia

(2016) D.F. Rosauer et al.   BIOLOGICAL CONSERVATION

Multilocus phylogeography reveals nested endemism in a gecko across the monsoonal tropics of Australia

(2016) C. Moritz et al.   MOLECULAR ECOLOGY

Phylogenomics at the tips: inferring lineages and their demographic history in a tropical lizard, Carlia amax

(2016) Sally Potter et al.   MOLECULAR ECOLOGY

A mid-Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards

(2016) Ivan Prates et al.   MOLECULAR ECOLOGY

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

(2016) Ivan Prates et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In the light of evolution X: Comparative phylogeography

(2016) John C. Avise et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phenotypes in phylogeography: Species’ traits, environmental variation, and vertebrate diversification

(2016) Kelly R. Zamudio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses

(2016) Anna Papadopoulou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The aggregate site frequency spectrum for comparative population genomic inference

(2015) Alexander T. Xue et al.   MOLECULAR ECOLOGY

Exon capture phylogenomics: efficacy across scales of divergence

(2015) Jason G. Bragg et al.   Molecular Ecology Resources

Sex reversal triggers the rapid transition from genetic to temperature-dependent sex

(2015) Clare E. Holleley et al.   NATURE

Community ecology in a changing environment: Perspectives from the Quaternary

(2015) Stephen T. Jackson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lineage Range Estimation Method Reveals Fine-Scale Endemism Linked to Pleistocene Stability in Australian Rainforest Herpetofauna

(2015) Dan F. Rosauer et al.   PLoS One

Independent Demographic Responses to Climate Change among Temperate and Tropical Milksnakes (Colubridae: Genus Lampropeltis)

(2015) Sara Ruane et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Contrasting patterns of persistence and diversification in vicars of a widespread Australian lizard lineage (theOedura marmoratacomplex)

(2014) Paul M. Oliver et al.   JOURNAL OF BIOGEOGRAPHY

Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

(2014) Yvonne L. Chan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Broadscale phylogeographic structure of five freshwater fishes across the Australian Monsoonal Tropics

(2014) Joel A. Huey et al.   Freshwater Science

Extending ecological niche models to the past 120 000 years corroborates the lack of strong phylogeographic structure in the Crested Drongo (Dicrurus forficatus forficatus) on Madagascar

(2013) Jérôme Fuchs et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Why are there so many species in the tropics?

(2013) James H. Brown   JOURNAL OF BIOGEOGRAPHY

The biogeographical boundaries of northern Australia: evidence from ecological niche models and a multi-locus phylogeny ofUperoleiatoadlets (Anura: Myobatrachidae)

(2013) Renee A. Catullo et al.   JOURNAL OF BIOGEOGRAPHY

De novotranscriptomic analyses for non-model organisms: an evaluation of methods across a multi-species data set

(2013) Sonal Singhal   Molecular Ecology Resources

The effect of sea level on glacial Indo-Pacific climate

(2013) Pedro N. DiNezio et al.   Nature Geoscience

Identifying the World's Most Climate Change Vulnerable Species: A Systematic Trait-Based Assessment of all Birds, Amphibians and Corals

(2013) Wendy B. Foden et al.   PLoS One

Palaeoenvironmental change in tropical Australasia over the last 30,000 years – a synthesis by the OZ-INTIMATE group

(2013) Jessica M. Reeves et al.   QUATERNARY SCIENCE REVIEWS

Hidden biodiversity in rare northern Australian vertebrates: the case of the clawless geckos (Crenadactylus, Diplodactylidae) of the Kimberley

(2013) Paul M. Oliver et al.   WILDLIFE RESEARCH

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Biogeographic barriers in north-western Australia: an overview and standardisation of nomenclature

(2012) Mark D. B. Eldridge et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Multiple biogeographical barriers identified across the monsoon tropics of northern Australia: phylogeographic analysis of thebrachyotisgroup of rock-wallabies

(2012) SALLY POTTER et al.   MOLECULAR ECOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Predicting organismal vulnerability to climate warming: roles of behaviour, physiology and adaptation

(2012) R. B. Huey et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

abc: an R package for approximate Bayesian computation (ABC)

(2012) Katalin Csilléry et al.   Methods in Ecology and Evolution

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Comparative multi-locus phylogeography confirms multiple vicariance events in co-distributed rainforest frogs

(2011) R. C. Bell et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Dynamic refugia and species persistence: tracking spatial shifts in habitat through time

(2010) Catherine H. Graham et al.   ECOGRAPHY

EVIDENCE OF CONSTRAINED PHENOTYPIC EVOLUTION IN A CRYPTIC SPECIES COMPLEX OF AGAMID LIZARDS

(2010) Katie L. Smith et al.   EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Erosion of Lizard Diversity by Climate Change and Altered Thermal Niches

(2010) B. Sinervo et al.   SCIENCE

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

Biogeography of the Australian monsoon tropics

(2009) D. M. J. S. Bowman et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

High-latitude climate sensitivity to ice-sheet forcing over the last 120kyr

(2009) Joy S. Singarayer et al.   QUATERNARY SCIENCE REVIEWS

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Combined mitochondrial and nuclear data enhance resolution of a rapid radiation of Australian rainbow skinks (Scincidae: Carlia)

(2008) G DOLMAN et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Impacts of climate warming on terrestrial ectotherms across latitude

(2008) C. A. Deutsch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA

(2008) C. Moritz et al.   SCIENCE

Global Warming, Elevational Range Shifts, and Lowland Biotic Attrition in the Wet Tropics

(2008) R. K. Colwell et al.   SCIENCE

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Towards an Integrated Framework for Assessing the Vulnerability of Species to Climate Change

(2008) Stephen E Williams et al.   PLOS BIOLOGY