Loggerhead sea turtle embryos (Caretta caretta ) regulate expression of stress response and developmental genes when exposed to a biologically realistic heat stress

Evolutionary potential of upper thermal tolerance: biogeographic patterns and expectations under climate change

(2016) Sarah E. Diamond   Annals of the New York Academy of Sciences

De Novo assembly and annotation of the freshwater crayfish Astacus astacus transcriptome

(2016) Kathrin Theissinger et al.   Marine Genomics

Heritable variation in heat shock gene expression: a potential mechanism for adaptation to thermal stress in embryos of sea turtles

(2016) J. N. Tedeschi et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Insect Heat Shock Proteins During Stress and Diapause

(2015) Allison M. King et al.   Annual Review of Entomology

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

First approximation to congenital malformation rates in embryos and hatchlings of sea turtles

(2015) Annelisse Bárcenas-Ibarra et al.   BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY

Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics

(2015) Athanasia C. Tzika et al.   Genome Biology and Evolution

The environmental genomics of metazoan thermal adaptation

(2015) D Porcelli et al.   HEREDITY

Increased expression of Hsp70 and Hsp90 mRNA as biomarkers of thermal stress in loggerhead turtle embryos (Caretta Caretta)

(2015) J.N. Tedeschi et al.   JOURNAL OF THERMAL BIOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

First approximation to congenital malformation rates in embryos and hatchlings of sea turtles

(2015) Annelisse Bárcenas-Ibarra et al.   BIRTH DEFECTS RESEARCH PART A-CLINICAL AND MOLECULAR TERATOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

The behavioural and physiological strategies of bird and reptile embryos in response to unpredictable variation in nest temperature

(2014) Wei-Guo Du et al.   BIOLOGICAL REVIEWS

Myocilin Regulates Cell Proliferation and Survival

(2014) Myung Kuk Joe et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Evolution and Adaptive Potential of Transcriptional Variation in Sticklebacks—Signatures of Selection and Widespread Heritability

(2014) Erica H. Leder et al.   MOLECULAR BIOLOGY AND EVOLUTION

Thermal tolerances of sea turtle embryos: current understanding and future directions

(2014) R Howard et al.   Endangered Species Research

Modeling the Effects of Climate Change–Induced Shifts in Reproductive Phenology on Temperature-Dependent Traits

(2013) Rory S. Telemeco et al.   AMERICAN NATURALIST

De novo assembly and characterization of tissue specific transcriptomes in the emerald notothen, Trematomus bernacchii

(2013) Troy J Huth et al.   BMC GENOMICS

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

Forecasting the viability of sea turtle eggs in a warming world

(2013) David A. Pike   GLOBAL CHANGE BIOLOGY

Key parameters describing temperature-dependent sex determination in the southernmost population of loggerhead sea turtles

(2013) Lorian Woolgar et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Next-generation transcriptome profiling reveals insights into genetic factors contributing to growth differences and temperature adaptation in Australian populations of barramundi (Lates calcarifer)

(2013) James R. Newton et al.   Marine Genomics

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish

(2013) Shikai Liu et al.   PHYSIOLOGICAL GENOMICS

Changes in the transcriptome of morula-stage bovine embryos caused by heat shock: relationship to developmental acquisition of thermotolerance

(2013) Miki Sakatani et al.   Reproductive Biology and Endocrinology

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

Chicken Corneocyte Cross-Linked Proteome

(2012) Robert H. Rice et al.   JOURNAL OF PROTEOME RESEARCH

Identification of a heat shock cognate protein 70 gene in Chinese soft-shell turtle (Pelodiscus sinensis) and its expression profiles under thermal stress

(2012) Xiao-liang Li et al.   Journal of Zhejiang University-SCIENCE B

The Kelch Repeat Protein KLHDC10 Regulates Oxidative Stress-Induced ASK1 Activation by Suppressing PP5

(2012) Yusuke Sekine et al.   MOLECULAR CELL

Genetics of gene expression responses to temperature stress in a sea urchin gene network

(2012) DANIEL E. RUNCIE et al.   MOLECULAR ECOLOGY

Regulation of HSF1 Function in the Heat Stress Response: Implications in Aging and Disease

(2011) Julius Anckar et al.   Annual Review of Biochemistry

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

BAG3: a multifaceted protein that regulates major cell pathways

(2011) A Rosati et al.   Cell Death & Disease

Reptilian-transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles

(2011) Athanasia C Tzika et al.   EvoDevo

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

The heat shock factor family and adaptation to proteotoxic stress

(2010) Mitsuaki Fujimoto et al.   FEBS Journal

Increased mortality can promote evolutionary adaptation of forest trees to climate change

(2010) Anna Kuparinen et al.   FOREST ECOLOGY AND MANAGEMENT

Jarid2 and PRC2, partners in regulating gene expression

(2010) G. Li et al.   GENES & DEVELOPMENT

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Heat shock factors: integrators of cell stress, development and lifespan

(2010) Malin Åkerfelt et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Adaptation genomics: the next generation

(2010) Jessica Stapley et al.   TRENDS IN ECOLOGY & EVOLUTION

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Seasonality, abundance and breeding biology of one of the largest populations of nesting flatback turtles,Natator depressus: Cape Domett, Western Australia

(2009) Andrea U. Whiting et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Modulation of stress proteins and apoptotic regulators in the anoxia tolerant turtle brain

(2009) Shailaja Kesaraju et al.   JOURNAL OF NEUROCHEMISTRY

A Proteomic Investigation of Ligand-dependent HSP90 Complexes Reveals CHORDC1 as a Novel ADP-dependent HSP90-interacting Protein

(2009) Jacob J. Gano et al.   MOLECULAR & CELLULAR PROTEOMICS

Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology

(2009) ANNE C. DALZIEL et al.   MOLECULAR ECOLOGY

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data

(2009) Daniel Ramsköld et al.   PLoS Computational Biology

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Climate change and marine turtles

(2009) LA Hawkes et al.   Endangered Species Research

Structural and Functional Diversities between Members of the Human HSPB, HSPH, HSPA, and DNAJ Chaperone Families†

(2008) Michel J. Vos et al.   BIOCHEMISTRY

Predicting the fate of a living fossil: how will global warming affect sex determination and hatching phenology in tuatara?

(2008) N. J Mitchell et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES