Ecological genomics of tropical trees: how local population size and allelic diversity of resistance genes relate to immune responses, cosusceptibility to pathogens, and negative density dependence

RipAY, a Plant Pathogen Effector Protein, Exhibits Robust γ-Glutamyl Cyclotransferase Activity When Stimulated by Eukaryotic Thioredoxins

(2016) Shoko Fujiwara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Ralstonia solanacearum type III effector RipAY targets plant redox regulators to suppress immune responses

(2016) Yuying Sang et al.   MOLECULAR PLANT PATHOLOGY

The combined nitrate reductase and nitrite-dependent route of NO synthesis in potato immunity to Phytophthora infestans

(2016) Jolanta Floryszak-Wieczorek et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Small Molecule DFPM Derivative-Activated Plant Resistance Protein Signaling in Roots Is Unaffected by EDS1 Subcellular Targeting Signal and Chemical Genetic Isolation of victr R-Protein Mutants

(2016) Hans-Henning Kunz et al.   PLoS One

Ralstonia solanacearum Type III Effector RipAY Is a Glutathione-Degrading Enzyme That Is Activated by Plant Cytosolic Thioredoxins and Suppresses Plant Immunity

(2016) Takafumi Mukaihara et al.   mBio

A disulphide isomerase gene (PDI-V) from Haynaldia villosa contributes to powdery mildew resistance in common wheat

(2016) Muhammad Faheem et al.   Scientific Reports

Modification of Bacterial Effector Proteins Inside Eukaryotic Host Cells

(2016) Crina M. Popa et al.   Frontiers in Cellular and Infection Microbiology

Formation of the Isthmus of Panama

(2016) A. ODea et al.   Science Advances

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

(2016) Loren A. Honaas et al.   PLoS One

Expression of genes involved in the salicylic acid pathway in type h1 thioredoxin transiently silenced pepper plants during a begomovirus compatible interaction

(2015) Marianne S. Luna-Rivero et al.   MOLECULAR GENETICS AND GENOMICS

Two linked pairs of Arabidopsis TNL resistance genes independently confer recognition of bacterial effector AvrRps4

(2015) Simon B. Saucet et al.   Nature Communications

Cascading effects of host plant inbreeding on the larval growth, muscle molecular composition, and flight capacity of an adult herbivorous insect

(2014) Scott L. Portman et al.   FUNCTIONAL ECOLOGY

Coexistence and relative abundance in plant communities are determined by feedbacks when the scale of feedback and dispersal is local

(2014) Keenan M. L. Mack et al.   JOURNAL OF ECOLOGY

The long-term maintenance of a resistance polymorphism through diffuse interactions

(2014) Talia L. Karasov et al.   NATURE

Phylotranscriptomic analysis of the origin and early diversification of land plants

(2014) Norman J. Wickett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PROTEIN DISULFIDE ISOMERASE LIKE 5-1is a susceptibility factor to plant viruses

(2014) Ping Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-throughput sequencing reveals inbreeding depression in a natural population

(2014) J. I. Hoffman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological and evolutionary effects of fragmentation on infectious disease dynamics

(2014) J. Jousimo et al.   SCIENCE

Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression

(2013) Loren A Honaas et al.   BMC PLANT BIOLOGY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

High Genetic Diversity in a Potentially Vulnerable Tropical Tree Species Despite Extreme Habitat Loss

(2013) Annika M. E. Noreen et al.   PLoS One

Pivoting the Plant Immune System from Dissection to Deployment

(2013) J. L. Dangl et al.   SCIENCE

Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group

(2013) C. Saintenac et al.   SCIENCE

The Amborella Genome and the Evolution of Flowering Plants

(2013) et al.   SCIENCE

Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)

(2013) Ray Ming et al.   GENOME BIOLOGY

Inbreeding, herbivory, and the transcriptome of Solanum carolinense

(2012) Rupesh R. Kariyat et al.   ENTOMOLOGIA EXPERIMENTALIS ET APPLICATA

Predicting the Functional, Molecular, and Phenotypic Consequences of Amino Acid Substitutions using Hidden Markov Models

(2012) Hashem A. Shihab et al.   HUMAN MUTATION

Natural Variation in Small Molecule-Induced TIR-NB-LRR Signaling Induces Root Growth Arrest via EDS1- and PAD4-Complexed R Protein VICTR in Arabidopsis

(2012) T.-H. Kim et al.   PLANT CELL

Conspecific Negative Density Dependence and Forest Diversity

(2012) D. J. Johnson et al.   SCIENCE

Tricking the Guard: Exploiting Plant Defense for Disease Susceptibility

(2012) J. Lorang et al.   SCIENCE

Unifying concepts and mechanisms in the specificity of plant–enemy interactions

(2012) Luke G. Barrett et al.   TRENDS IN PLANT SCIENCE

Plant-Parasite Coevolution: Bridging the Gap between Genetics and Ecology

(2011) James K. M. Brown et al.   Annual Review of Phytopathology

"Herd Immunity": A Rough Guide

(2011) P. Fine et al.   CLINICAL INFECTIOUS DISEASES

Strong self-limitation promotes the persistence of rare species

(2011) Glenda Yenni et al.   ECOLOGY

Experimental evidence for a phylogenetic Janzen-Connell effect in a subtropical forest

(2011) Xubing Liu et al.   ECOLOGY LETTERS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A theoretical model linking interspecific variation in density dependence to species abundances

(2011) Ryan A. Chisholm et al.   Theoretical Ecology

Canopy gaps decrease microbial densities and disease risk for a shade-intolerant tree species

(2010) Kurt O. Reinhart et al.   ACTA OECOLOGICA-INTERNATIONAL JOURNAL OF ECOLOGY

Testing the Janzen-Connell mechanism: pathogens cause overcompensating density dependence in a tropical tree

(2010) Robert Bagchi et al.   ECOLOGY LETTERS

Plants versus pathogens: an evolutionary arms race

(2010) Jonathan P. Anderson et al.   FUNCTIONAL PLANT BIOLOGY

Low S-allele numbers limit mate availability, reduce seed set and skew fitness in small populations of a self-incompatible plant

(2010) Andrew G. Young et al.   JOURNAL OF APPLIED ECOLOGY

Conspecific and heterospecific plant-soil feedbacks influence survivorship and growth of temperate tree seedlings

(2010) Sarah McCarthy-Neumann et al.   JOURNAL OF ECOLOGY

Spatial variation in disease resistance: from molecules to metapopulations

(2010) Anna-Liisa Laine et al.   JOURNAL OF ECOLOGY

Diversity at theMlaPowdery Mildew Resistance Locus from Cultivated Barley Reveals Sites of Positive Selection

(2010) Sabine Seeholzer et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest

(2010) Scott A. Mangan et al.   NATURE

Plant immunity: towards an integrated view of plant–pathogen interactions

(2010) Peter N. Dodds et al.   NATURE REVIEWS GENETICS

Networks in Plant Epidemiology: From Genes to Landscapes, Countries, and Continents

(2010) Mathieu Moslonka-Lefebvre et al.   PHYTOPATHOLOGY

Asymmetric Density Dependence Shapes Species Abundances in a Tropical Tree Community

(2010) L. S. Comita et al.   SCIENCE

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

Resistance and tolerance to herbivory changes with inbreeding and ontogeny in a wild gourd (Cucurbitaceae)

(2008) Daolin Du et al.   AMERICAN JOURNAL OF BOTANY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Shades of gray: the world of quantitative disease resistance

(2008) Jesse A. Poland et al.   TRENDS IN PLANT SCIENCE

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY