Ancestral acquisitions, gene flow and multiple evolutionary trajectories of the type three secretion system and effectors in Xanthomonas plant pathogens

Recombination-prone bacterial strains form a reservoir from which epidemic clones emerge in agroecosystems

(2016) Déborah Merda et al.   Environmental Microbiology Reports

Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov.

(2015) Lindsay R. Triplett et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

(2015) Brice Roux et al.   BMC GENOMICS

Targeting of plant pattern recognition receptor-triggered immunity by bacterial type-III secretion system effectors

(2015) Alberto P Macho et al.   CURRENT OPINION IN MICROBIOLOGY

Inheritance of Pantoea type III secretion systems through both vertical and horizontal transfer

(2015) Morgan W. B. Kirzinger et al.   MOLECULAR GENETICS AND GENOMICS

Identification of novel X anthomonas euvesicatoria type III effector proteins by a machine-learning approach

(2015) Doron Teper et al.   MOLECULAR PLANT PATHOLOGY

The Type III Effector AvrBs2 inXanthomonas oryzaepv.oryzicolaSuppresses Rice Immunity and Promotes Disease Development

(2015) Shuai Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Type III secretion systems: the bacterial flagellum and the injectisome

(2015) Andreas Diepold et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation

(2015) Sophie Cesbron et al.   Frontiers in Plant Science

Full Genome Sequence Analysis of Two Isolates Reveals a Novel Xanthomonas Species Close to the Sugarcane Pathogen Xanthomonas albilineans

(2015) Isabelle Pieretti et al.   Genes

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes

(2014) E. Sallet et al.   BIOINFORMATICS

Cheating by type 3 secretion system-negative Pseudomonas aeruginosa during pulmonary infection

(2014) K. Czechowska et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The noncanonical type III secretion system ofXanthomonas translucenspv.graminisis essential for forage grass infection

(2013) Fabienne Wichmann et al.   MOLECULAR PLANT PATHOLOGY

Phylogenomics and Molecular Signatures for Species from the Plant Pathogen-Containing Order Xanthomonadales

(2013) Hafiz Sohail Naushad et al.   PLoS One

Comparative Genomics of Multiple Strains of Pseudomonas cannabina pv. alisalensis, a Potential Model Pathogen of Both Monocots and Dicots

(2013) Panagiotis F. Sarris et al.   PLoS One

Characterization of the SPI-1 and Rsp type three secretion systems inPseudomonas fluorescens F113

(2013) Matthieu Barret et al.   Environmental Microbiology Reports

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic

(2012) Moudjahidou Demba Diallo et al.   ISME Journal

Characterization of HrpB2 from Xanthomonas campestris pv. vesicatoria identifies protein regions that are essential for type III secretion pilus formation

(2012) N. Hartmann et al.   MICROBIOLOGY-SGM

Analysis of new type III effectors fromXanthomonasuncovers XopB and XopS as suppressors of plant immunity

(2012) Sebastian Schulze et al.   NEW PHYTOLOGIST

Pseudomonas syringae type III effector repertoires: last words in endless arguments

(2012) Magdalen Lindeberg et al.   TRENDS IN MICROBIOLOGY

The Non-Flagellar Type III Secretion System Evolved from the Bacterial Flagellum and Diversified into Host-Cell Adapted Systems

(2012) Sophie S. Abby et al.   PLoS Genetics

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

(2011) Neha Potnis et al.   BMC GENOMICS

XopR, a Type III Effector Secreted byXanthomonas oryzaepv.oryzae, Suppresses Microbe-Associated Molecular Pattern-Triggered Immunity inArabidopsis thaliana

(2011) Chiharu Akimoto-Tomiyama et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

(2011) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

(2011) Vincent Ranwez et al.   PLoS One

Computational and Biochemical Analysis of the Xanthomonas Effector AvrBs2 and Its Role in the Modulation of Xanthomonas Type Three Effector Delivery

(2011) Bingyu Zhao et al.   PLoS Pathogens

Type Three Secretion System in Pseudomonas savastanoi Pathovars: Does Timing Matter?

(2011) Stefania Tegli et al.   Genes

Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade

(2011) David J. Studholme et al.   Genes

Playing the “Harp”: Evolution of Our Understanding ofhrp/hrcGenes

(2010) Anastasia P. Tampakaki et al.   Annual Review of Phytopathology

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Computational Prediction of Type III and IV Secreted Effectors in Gram-Negative Bacteria

(2010) Jason E. McDermott et al.   INFECTION AND IMMUNITY

Pseudomonas syringaeStrains Naturally Lacking the ClassicalP. syringae hrp/hrcLocus Are Common Leaf Colonizers Equipped with an Atypical Type III Secretion System

(2010) Christopher R. Clarke et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genomic and Evolutionary Features of the SPI-1 Type III Secretion System That Is Present inXanthomonas albilineansbut Is Not Essential for Xylem Colonization and Symptom Development of Sugarcane Leaf Scald

(2010) Mélanie Marguerettaz et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

The type III effectors ofXanthomonas

(2009) FRANK F. WHITE et al.   MOLECULAR PLANT PATHOLOGY

New Zealand strains of plant pathogenic bacteria classified by multi-locus sequence analysis; proposal ofXanthomonas dyeisp. nov.

(2009) J. M. Young et al.   PLANT PATHOLOGY

Prediction of Type III Secretion Signals in Genomes of Gram-Negative Bacteria

(2009) Martin Löwer et al.   PLoS One

A «Repertoire for Repertoire» Hypothesis: Repertoires of Type Three Effectors are Candidate Determinants of Host Specificity in Xanthomonas

(2009) Ahmed Hajri et al.   PLoS One

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Naturally Occurring Nonpathogenic Isolates of the Plant Pathogen Pseudomonas syringae Lack a Type III Secretion System and Effector Gene Orthologues

(2008) T. J. Mohr et al.   JOURNAL OF BACTERIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

HpaA fromXanthomonasis a regulator of type III secretion

(2008) Christian Lorenz et al.   MOLECULAR MICROBIOLOGY

A multilocus sequence analysis of the genus Xanthomonas

(2008) J.M. Young et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY