Development of SNP markers based on transcriptome sequences and their application in germplasm identification in radish (Raphanus sativus L.)

De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

(2016) Shanshan Nie et al.   BMC GENOMICS

Transcriptome analysis and molecular marker discovery in Solanum incanum and S. aethiopicum, two close relatives of the common eggplant (Solanum melongena) with interest for breeding

(2016) P. Gramazio et al.   BMC GENOMICS

Comparison of SNP and CAPS markers application in genetic research in wheat and barley

(2016) Yuri Shavrukov   BMC PLANT BIOLOGY

De novo assembly and characterization of foot transcriptome and microsatellite marker development for Paphia textile

(2016) Xiaoming Chen et al.   GENE

Development of new SNP derived cleaved amplified polymorphic sequence marker set and its successful utilization in the genetic analysis of seed color variation in barley

(2016) Annemarie Bungartz et al.   GENOMICS

Development of gene-based markers for theTurnip mosaic virusresistance generetr02inBrassica rapa

(2016) Guo-Liang Li et al.   PLANT BREEDING

Genotyping-by-Sequencing SNP Identification for Crops without a Reference Genome: Using Transcriptome Based Mapping as an Alternative Strategy

(2016) Cécile Berthouly-Salazar et al.   Frontiers in Plant Science

Development of SNP markers and their application for genetic diversity analysis in the oil palm (Elaeis guineensis)

(2015) P.W. Ong et al.   GENETICS AND MOLECULAR RESEARCH

A new strategy for complete identification of sea buckthorn cultivars by using random amplified polymorphic DNA markers

(2015) G. Yang et al.   GENETICS AND MOLECULAR RESEARCH

Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum)

(2015) Hikaru Tsukazaki et al.   MOLECULAR BREEDING

De novo sequencing of root transcriptome reveals complex cadmium-responsive regulatory networks in radish (Raphanus sativus L.)

(2015) Liang Xu et al.   PLANT SCIENCE

Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome

(2015) Lise Pingault et al.   GENOME BIOLOGY

Gene Expression Profiling of Development and Anthocyanin Accumulation in Kiwifruit (Actinidia chinensis) Based on Transcriptome Sequencing

(2015) Wenbin Li et al.   PLoS One

Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map

(2014) Nur Izzah et al.   BMC GENOMICS

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

(2014) Leonardo Salgado et al.   BMC GENOMICS

De novo assembly of red clover transcriptome based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

(2014) Steven A Yates et al.   BMC GENOMICS

Development of EST-based SNP and InDel markers and their utilization in tetraploid cotton genetic mapping

(2014) Ximei Li et al.   BMC GENOMICS

Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea

(2014) Jorge Duarte et al.   BMC GENOMICS

Draft Sequences of the Radish (Raphanus sativus L.) Genome

(2014) Hiroyasu Kitashiba et al.   DNA RESEARCH

Development of SNP-based dCAPS markers linked to major head smut resistance quantitative trait locus qHS2.09 in maize

(2014) Hong Di et al.   EUPHYTICA

The first Illumina-based de novo transcriptome sequencing and analysis of pumpkin (Cucurbita moschata Duch.) and SSR marker development

(2014) Tingquan Wu et al.   MOLECULAR BREEDING

Development of SNP and InDel markers via de novo transcriptome assembly in Sesamum indicum L.

(2014) Libin Wei et al.   MOLECULAR BREEDING

De novo transcriptome assembly and the identification of gene-associated single-nucleotide polymorphism markers in Asian and American ginseng roots

(2014) Ick-Hyun Jo et al.   MOLECULAR GENETICS AND GENOMICS

Single-Nucleotide Polymorphism Markers from De-Novo Assembly of the Pomegranate Transcriptome Reveal Germplasm Genetic Diversity

(2014) Ron Ophir et al.   PLoS One

De Novo Assembly and Transcriptome Analysis of the Rubber Tree (Hevea brasiliensis) and SNP Markers Development for Rubber Biosynthesis Pathways

(2014) Camila Campos Mantello et al.   PLoS One

Development of STS and CAPS markers for variety identification and genetic diversity analysis of tea germplasm in Taiwan

(2014) Chih-Yi Hu et al.   Botanical Studies

Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.)

(2013) Di Shen et al.   BMC GENOMICS

Novel and useful genic-SSR markers from de novo transcriptome sequencing of radish (Raphanus sativus L.)

(2013) Lulu Zhai et al.   MOLECULAR BREEDING

A 34K SNP genotyping array forPopulus trichocarpa: Design, application to the study of natural populations and transferability to otherPopulusspecies

(2013) A. Geraldes et al.   Molecular Ecology Resources

QTL Analysis Using SNP Markers Developed by Next-Generation Sequencing for Identification of Candidate Genes Controlling 4-Methylthio-3-Butenyl Glucosinolate Contents in Roots of Radish, Raphanus sativus L

(2013) Zhongwei Zou et al.   PLoS One

Transcriptome Profiling of Radish (Raphanus sativus L.) Root and Identification of Genes Involved in Response to Lead (Pb) Stress with Next Generation Sequencing

(2013) Yan Wang et al.   PLoS One

TRAP markers generated with resistant gene analog sequences and their application to genetic diversity analysis of radish germplasm

(2013) Dandan Cheng et al.   SCIENTIA HORTICULTURAE

EST-SNP discovery and dense genetic mapping in lentil (Lens culinaris Medik.) enable candidate gene selection for boron tolerance

(2013) Sukhjiwan Kaur et al.   THEORETICAL AND APPLIED GENETICS

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

(2012) Hamid Ashrafi et al.   BMC GENOMICS

Development and validation of genic-SSR markers in sesame by RNA-seq

(2012) Haiyang Zhang et al.   BMC GENOMICS

Transcriptome sequencing for SNP discovery across Cucumis melo

(2012) José Blanca et al.   BMC GENOMICS

Plant variety and cultivar identification: advances and prospects

(2012) Nicholas Kibet Korir et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

A novel strategy for identification of 47 pomegranate (Punica granatum) cultivars using RAPD markers

(2012) Y.P. Zhang et al.   GENETICS AND MOLECULAR RESEARCH

Transcriptome sequencing of wild chickpea as a rich resource for marker development

(2012) Shalu Jhanwar et al.   PLANT BIOTECHNOLOGY JOURNAL

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

(2012) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome analysis of the roots at early and late seedling stages using Illumina paired-end sequencing and development of EST-SSR markers in radish

(2012) Shufen Wang et al.   PLANT CELL REPORTS

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers

(2012) Gaurav Agarwal et al.   PLoS One

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Extensive Chromosome Homoeology among Brassiceae Species Were Revealed by Comparative Genetic Mapping with High-Density EST-Based SNP Markers in Radish (Raphanus sativus L.)

(2011) F. Li et al.   DNA RESEARCH

Genome-wide analysis of plastome sequence variation and development of plastidial CAPS markers in common potato and related Solanum species

(2011) Daniela Gargano et al.   GENETIC RESOURCES AND CROP EVOLUTION

Transcriptome analysis and SNP/SSR marker information of red pepper variety YCM334 and Taean

(2011) Fu-Hao Lu et al.   SCIENTIA HORTICULTURAE

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

(2010) Shaogui Guo et al.   BMC GENOMICS

SNP discovery in the bovine milk transcriptome using RNA-Seq technology

(2010) Angela Cánovas et al.   MAMMALIAN GENOME

SNPs discovery and CAPS marker conversion in soybean

(2010) Yongjun Shu et al.   MOLECULAR BIOLOGY REPORTS

Genetic Diversity of Radish (Raphanus sativus L.) Germplasm Resources Revealed by AFLP and RAPD Markers

(2010) Qiusheng Kong et al.   PLANT MOLECULAR BIOLOGY REPORTER

Development and validation of molecular markers for characterization of Boehmeria nivea var. nivea and Boehmeria nivea var. tenacissima

(2010) Chuan-I Li et al.   Chinese Medicine

Conversion of barley SNPs into PCR-based markers using dCAPS method

(2009) Fahimeh Shahinnia et al.   GENETICS AND MOLECULAR BIOLOGY

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Development of SNP-based CAPS and dCAPS markers in eight different genes involved in starch biosynthesis in rice

(2009) Gi-An Lee et al.   MOLECULAR BREEDING

A genome-wide analysis of single nucleotide polymorphism diversity in the world's major cereal crops

(2009) Gary L. A. Barker et al.   PLANT BIOTECHNOLOGY JOURNAL

Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes

(2009) Keith J. Edwards et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Development of cleaved amplified polymorphic sequence (CAPS)-based markers for identification of sweetpotato cultivars

(2009) Masaru Tanaka et al.   SCIENTIA HORTICULTURAE

The Complementary Neighborhood Patterns and Methylation-to-Mutation Likelihood Structures of 15,110 Single-Nucleotide Polymorphisms in the Bovine Genome

(2008) Z. Jiang et al.   GENETICS

DNA fingerprinting and genetic diversity analysis of late-bolting radish cultivars with RAPD, ISSR and SRAP markers

(2008) Li-Wang Liu et al.   SCIENTIA HORTICULTURAE

Integration of new CAPS and dCAPS-RGA markers into a composite chickpea genetic map and their association with disease resistance

(2008) Carmen Palomino et al.   THEORETICAL AND APPLIED GENETICS