P3: Phylogenetic Posterior Prediction in RevBayes

New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity

(2017) David A. Duchêne et al.   MOLECULAR BIOLOGY AND EVOLUTION

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Can We Identify Genes with Increased Phylogenetic Reliability?

(2015) Vinson P. Doyle et al.   SYSTEMATIC BIOLOGY

Predictive Approaches to Assessing the Fit of Evolutionary Models

(2014) Jeremy M. Brown   SYSTEMATIC BIOLOGY

Detection of Implausible Phylogenetic Inferences Using Posterior Predictive Assessment of Model Fit

(2014) Jeremy M. Brown   SYSTEMATIC BIOLOGY

Probabilistic Graphical Model Representation in Phylogenetics

(2014) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals

(2013) Jonathan Romiguier et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy

(2008) J. M. Brown et al.   BIOINFORMATICS